RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 Q9Y3F1 56 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 PLXNA3P51805 1871 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 SPEGQ15772 3267 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 SHISA9B4DS77 424 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 NPIPB9F8W1W9 429 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 HAS3O00219 553 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 PHOX2AO14813 284 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 SNAP91O60641 907 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 CXCL10P02778 98 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 GP9P14770 177 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 CD27P26842 260 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 LHX1P48742 406 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 CLCN4P51793 760 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 CSE1LP55060 971 aaKnown RBP3.94□□□□□ -1.78
PRPF39-209ENST00000556353 PRKG2Q13237 762 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 HSDL1Q3SXM5 330 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 LCE3AQ5TA76 89 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 RUFY3Q7L099 469 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 CHST3Q7LGC8 479 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 SYT2Q8N9I0 419 aaPredicted RBP3.94□□□□□ -1.78
PRPF39-209ENST00000556353 METTL21AQ8WXB1 218 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 PIK3R3Q92569 461 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 ZNF597Q96LX8 424 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 BAG1Q99933 345 aaPredicted RBP3.94□□□□□ -1.78
PRPF39-209ENST00000556353 NOL11Q9H8H0 719 aaKnown RBP3.94□□□□□ -1.78
PRPF39-209ENST00000556353 PXMP2Q9NR77 195 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 ELF5Q9UKW6 265 aaPredicted RBP3.94□□□□□ -1.78
PRPF39-209ENST00000556353 CFAP45Q9UL16 551 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 BARX2Q9UMQ3 279 aaPredicted RBP3.94□□□□□ -1.78
PRPF39-209ENST00000556353 PCDHGB4Q9UN71 923 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 MTCH2Q9Y6C9 303 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 ZFHX4Q86UP3 3567 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 ABCB11O95342 1321 aa3.94□□□□□ -1.78
PRPF39-209ENST00000556353 CNOT1A5YKK6 2376 aaKnown RBP3.94□□□□□ -1.78
PRPF39-209ENST00000556353 MTCL1Q9Y4B5 1905 aaKnown RBP3.93□□□□□ -1.78
PRPF39-209ENST00000556353 ACACBO00763 2458 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 C2CD4DB7Z1M9 353 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 F8VZ95 297 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 G3V2L1 256 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 SURF4O15260 269 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 GPRIN2O60269 458 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 MELTFP08582 738 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 SAGP10523 405 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-209ENST00000556353 PCP11498 1178 aaKnown RBP3.93□□□□□ -1.78
PRPF39-209ENST00000556353 GLULP15104 373 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 PRPHP41219 470 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 LMAN1P49257 510 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 LRRC74AQ0VAA2 488 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 MRPL28Q13084 256 aaKnown RBP3.93□□□□□ -1.78
PRPF39-209ENST00000556353 PTGISQ16647 500 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 ZSCAN26Q16670 478 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 C6orf163Q5TEZ5 329 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 UNC5DQ6UXZ4 953 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 PHC2Q8IXK0 858 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 OR8H1Q8NGG4 311 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 OR4D10Q8NGI6 311 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 OR10G7Q8NGN6 311 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 PPTC7Q8NI37 304 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 ARNTL2Q8WYA1 636 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 ZNF75CPQ92670 426 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-209ENST00000556353 ESR2Q92731 530 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 C1orf147Q96MC9 270 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-209ENST00000556353 ATF6BQ99941 703 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 TCHPQ9BT92 498 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 CDH20Q9HBT6 801 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 ARGLU1Q9NWB6 273 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-209ENST00000556353 TRAF3IP3Q9Y228 551 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 FANCMQ8IYD8 2048 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 VWA8A3KMH1 1905 aa3.93□□□□□ -1.78
PRPF39-209ENST00000556353 SMG1Q96Q15 3661 aaKnown RBP3.93□□□□□ -1.78
PRPF39-209ENST00000556353 MAP1BP46821 2468 aaKnown RBP3.93□□□□□ -1.78
PRPF39-209ENST00000556353 USP24Q9UPU5 2620 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 PDCD11Q14690 1871 aaKnown RBP3.92□□□□□ -1.78
PRPF39-209ENST00000556353 NBEAQ8NFP9 2946 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 KMT2BQ9UMN6 2715 aaPredicted RBP3.92□□□□□ -1.78
PRPF39-209ENST00000556353 DSPP15924 2871 aaKnown RBP3.92□□□□□ -1.78
PRPF39-209ENST00000556353 A0A1W2PPM1 405 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 CASTOR2A6NHX0 329 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 E7EWF7 191 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 TRIM77I1YAP6 450 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 ZBTB5O15062 677 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 PLOD3O60568 738 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 GJB5O95377 273 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 PLEKHA8P1O95397 391 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 GGPS1O95749 300 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 HPP00738 406 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 GH1P01241 217 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 BCL3P20749 454 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 CD9P21926 228 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 CHMLP26374 656 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 HSPA4P34932 840 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 RFC2P35250 354 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 LIG4P49917 911 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 ASCL1P50553 236 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 DCDC1P59894 354 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 NPTX1Q15818 432 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 CELF3Q5SZQ8 465 aaKnown RBP3.92□□□□□ -1.78
PRPF39-209ENST00000556353 TTC19Q6DKK2 380 aaPredicted RBP3.92□□□□□ -1.78
PRPF39-209ENST00000556353 C3P1Q6ZMU1 363 aa3.92□□□□□ -1.78
PRPF39-209ENST00000556353 SERINC5Q86VE9 423 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms