RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 CALHM3Q86XJ0 350 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 TRAPPC5Q8IUR0 188 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 RIMKLAQ8IXN7 391 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 ZNF555Q8NEP9 628 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 OR8J2Q8NGG1 315 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 OR56A3Q8NH54 315 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 OR10G6Q8NH81 332 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 CYGBQ8WWM9 190 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 MARVELD3Q96A59 401 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 TBC1D20Q96BZ9 403 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 MAGED4Q96JG8 741 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 ZNF583Q96ND8 569 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 SEPHS2Q99611 448 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 SLC38A3Q99624 504 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 SLC29A1Q99808 456 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 PAIP1Q9H074 479 aaKnown RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 RBM38Q9H0Z9 239 aaKnown RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 RAD21L1Q9H4I0 556 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 EHD1Q9H4M9 534 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 KAT8Q9H7Z6 458 aaKnown RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 AKIRIN1Q9H9L7 192 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 STOX2Q9P2F5 926 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 VPS29Q9UBQ0 182 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 ADGRE2Q9UHX3 823 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 C3orf18Q9UK00 162 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 GMEB1Q9Y692 573 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 SEC16AO15027 2179 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 FER1L5A0AVI2 2057 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 DCHS2Q6V1P9 2916 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 C17orf113A0A1B0GUU1 675 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 TRIM64A6NGJ6 449 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 GNGT2O14610 69 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 KMOO15229 486 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 CCNDBP1O95273 360 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 TIAF1O95411 115 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 SERPINB1P30740 379 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 CCL11P51671 97 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 GFERP55789 205 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 GABARAPL2P60520 117 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 RPA4Q13156 261 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 TOP3AQ13472 1001 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-216ENST00000554975 CCNYL2Q5T2Q4 361 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 NOXRED1Q6NXP6 359 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 MYO7BQ6PIF6 2116 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 DNAJC14Q6Y2X3 702 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-216ENST00000554975 R3HCC1LQ7Z5L2 792 aaKnown RBP10.53□□□□□ -0.72
SHMT2-216ENST00000554975 GPR141Q7Z602 305 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 HIPK1Q86Z02 1210 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 CLEC4FQ8N1N0 589 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 ZNF786Q8N393 782 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 SETD9Q8NE22 299 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 OR10A6Q8NH74 314 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 OR5K1Q8NHB7 308 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 CT55Q8WUE5 264 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 WDR34Q96EX3 536 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 NRBF2Q96F24 287 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 AURKBQ96GD4 344 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-216ENST00000554975 LINC00615Q96LM1 132 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-216ENST00000554975 SLC24A3Q9HC58 644 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 TIMMDC1Q9NPL8 285 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 FARSBQ9NSD9 589 aaKnown RBP10.53□□□□□ -0.72
SHMT2-216ENST00000554975 ATAD3AQ9NVI7 634 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 SIRT5Q9NXA8 310 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 GMPR2Q9P2T1 348 aaKnown RBP10.53□□□□□ -0.72
SHMT2-216ENST00000554975 TBC1D29Q9UFV1 150 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 RSL24D1Q9UHA3 163 aaKnown RBP10.53□□□□□ -0.72
SHMT2-216ENST00000554975 TMPRSS11EQ9UL52 423 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 PPT2Q9UMR5 302 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 SLC22A14Q9Y267 594 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 SLC5A6Q9Y289 635 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 TSC22D4Q9Y3Q8 395 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 PCDHGA9Q9Y5G4 932 aaKnown RBP10.53□□□□□ -0.72
SHMT2-216ENST00000554975 TACC2O95359 2948 aa10.53□□□□□ -0.72
SHMT2-216ENST00000554975 A6NCN8 305 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 ARGFXA6NJG6 315 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 OR2AG2A6NM03 316 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 PDZK1P1A8MUH7 402 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 GPR89AB7ZAQ6 455 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 SCAMP2O15127 329 aaKnown RBP10.52□□□□□ -0.73
SHMT2-216ENST00000554975 ACOX3O15254 700 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 SGTAO43765 313 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 GPR89BP0CG08 455 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 F3P13726 295 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 COX7A2P14406 83 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 HSD17B2P37059 387 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 ARHGDIAP52565 204 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 TPD52P55327 224 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-216ENST00000554975 HHEXQ03014 270 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 TMEM115Q12893 351 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-216ENST00000554975 LSAMPQ13449 338 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 IL10RAQ13651 578 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 HIST2H2ACQ16777 129 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-216ENST00000554975 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.52□□□□□ -0.73
SHMT2-216ENST00000554975 RBM48Q5RL73 367 aaKnown RBP10.52□□□□□ -0.73
SHMT2-216ENST00000554975 SLC6A19Q695T7 634 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 HIST2H2AA3Q6FI13 130 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 MED27Q6P2C8 311 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 USP51Q70EK9 711 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 TRIM48Q8IWZ4 208 aa10.52□□□□□ -0.73
SHMT2-216ENST00000554975 NATD1Q8N6N6 113 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms