RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 VN1R1Q9GZP7 353 aa13.61□□□□□ -0.23
SHMT2-210ENST00000553950 C3orf14Q9HBI5 128 aa13.61□□□□□ -0.23
SHMT2-210ENST00000553950 ASCL3Q9NQ33 180 aa13.61□□□□□ -0.23
SHMT2-210ENST00000553950 PTGFRNQ9P2B2 879 aa13.61□□□□□ -0.23
SHMT2-210ENST00000553950 NEUROG3Q9Y4Z2 214 aa13.61□□□□□ -0.23
SHMT2-210ENST00000553950 CCDC88CQ9P219 2028 aa13.61□□□□□ -0.23
SHMT2-210ENST00000553950 NUP214P35658 2090 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-210ENST00000553950 TCRBV16S1A1N1A0A5B0 115 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 PMS2P1A4D2B8 440 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 ASPDHA6ND91 283 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 IDSB3KWA1 339 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 FAM227AF5H4B4 570 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 FBP2O00757 339 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 DNAJA2O60884 412 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 SCN2BO60939 215 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 DNAJB6O75190 326 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 COQ9O75208 318 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 BCAS2O75934 225 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-210ENST00000553950 C6orf47O95873 294 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 C8orf89P0DMQ9 161 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 LIPCP11150 499 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 SOAT1P35610 550 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 FEN1P39748 380 aaKnown RBP13.6□□□□□ -0.23
SHMT2-210ENST00000553950 EMP2P54851 167 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 ELAVL1Q15717 326 aaKnown RBP13.6□□□□□ -0.23
SHMT2-210ENST00000553950 MPEG1Q2M385 716 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 SPRED3Q2MJR0 410 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 SPDYE7PQ495Y7 208 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 LACTB2Q53H82 288 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-210ENST00000553950 VWA2Q5GFL6 755 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 RIPOR1Q6ZS17 1223 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 ANKRD46Q86W74 232 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 GALNT12Q8IXK2 581 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 PGAM4Q8N0Y7 254 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 ARHGAP24Q8N264 748 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 OR8J3Q8NGG0 315 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 OR56A1Q8NGH5 318 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 DAZLQ92904 295 aaKnown RBP13.6□□□□□ -0.23
SHMT2-210ENST00000553950 ANKRD9Q96BM1 317 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-210ENST00000553950 RBM18Q96H35 190 aaKnown RBP13.6□□□□□ -0.23
SHMT2-210ENST00000553950 NPAS2Q99743 824 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 ALOXE3Q9BYJ1 711 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 GLIPR2Q9H4G4 154 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 SERHLQ9NQF3 203 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-210ENST00000553950 C3orf18Q9UK00 162 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 AK5Q9Y6K8 562 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 DMXL1Q9Y485 3027 aa13.6□□□□□ -0.23
SHMT2-210ENST00000553950 A0A087WV62 115 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 EVPLLA8MZ36 301 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 ALOX12BO75342 701 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 CPSF4O95639 269 aaKnown RBP13.59□□□□□ -0.23
SHMT2-210ENST00000553950 KRT75O95678 551 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 IFNA16P05015 189 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 MAOAP21397 527 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 NT5EP21589 574 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 UQCRC2P22695 453 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 PTPN4P29074 926 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 ID4P47928 161 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 CPA2P48052 419 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 HBA1P69905 142 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 PHC1P78364 1004 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 VAC14Q08AM6 782 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 DNASE1L3Q13609 305 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 NSDHLQ15738 373 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 SPATS1Q496A3 300 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 PAGE3Q5JUK9 113 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 DNAJC14Q6Y2X3 702 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-210ENST00000553950 RETREG3Q86VR2 466 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 CCDC116Q8IYX3 515 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 CLECL1Q8IZS7 167 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 VWA5B2Q8N398 1253 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 IL22RA1Q8N6P7 574 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 ENDOVQ8N8Q3 282 aaKnown RBP13.59□□□□□ -0.23
SHMT2-210ENST00000553950 OR14A16Q8NHC5 309 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 SUN3Q8TAQ9 357 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 CT55Q8WUE5 264 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 LRRC58Q96CX6 371 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 MS4A4EQ96PG1 132 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 PHF12Q96QT6 1004 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 SOX17Q9H6I2 414 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-210ENST00000553950 SPAG4Q9NPE6 437 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 SLAMF7Q9NQ25 335 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 DDX18Q9NVP1 670 aaKnown RBP13.59□□□□□ -0.23
SHMT2-210ENST00000553950 CROTQ9UKG9 612 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 PTRH2Q9Y3E5 179 aaKnown RBP13.59□□□□□ -0.23
SHMT2-210ENST00000553950 GMEB1Q9Y692 573 aa13.59□□□□□ -0.23
SHMT2-210ENST00000553950 RNF103-CHMP3A0A140T963 221 aa13.58□□□□□ -0.24
SHMT2-210ENST00000553950 B2RBV5 119 aa13.58□□□□□ -0.24
SHMT2-210ENST00000553950 PLOD2O00469 737 aa13.58□□□□□ -0.24
SHMT2-210ENST00000553950 GYG2O15488 501 aa13.58□□□□□ -0.24
SHMT2-210ENST00000553950 JRKO75564 520 aa13.58□□□□□ -0.24
SHMT2-210ENST00000553950 SOX30O94993 753 aa13.58□□□□□ -0.24
SHMT2-210ENST00000553950 ABCB1P08183 1280 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-210ENST00000553950 T-ENOLP0DO92 83 aa13.58□□□□□ -0.24
SHMT2-210ENST00000553950 TCN2P20062 427 aa13.58□□□□□ -0.24
SHMT2-210ENST00000553950 CHI3L1P36222 383 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-210ENST00000553950 CAMK2BQ13554 666 aa13.58□□□□□ -0.24
SHMT2-210ENST00000553950 ERV3-1Q14264 604 aa13.58□□□□□ -0.24
SHMT2-210ENST00000553950 TBC1D25Q3MII6 688 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms