RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 LACC1Q8IV20 430 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBC1D3Q8IZP1 549 aaPredicted RBP17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TMEM145Q8NBT3 493 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 VANGL1Q8TAA9 524 aaPredicted RBP17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 DYNC2LI1Q8TCX1 351 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 XAGE5Q8WWM1 108 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 SLC35G5Q96KT7 338 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 ZNF354BQ96LW1 612 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 COL21A1Q96P44 957 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 IMPAD1Q9NX62 359 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 EHD3Q9NZN3 535 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 DUSP12Q9UNI6 340 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 KLHL20Q9Y2M5 609 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 ATG4BQ9Y4P1 393 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 ASB4Q9Y574 426 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 PMF1-BGLAPU3KQ54 211 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 F5P12259 2224 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 A0A1W2PR48 441 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 ZAR1LA6NP61 321 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 DNTTP04053 509 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 STSP08842 583 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 IDUAP35475 653 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 CRISP1P54107 249 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 PPP2CBP62714 309 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 PPP2CAP67775 309 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 OCA2Q04671 838 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 NR1D2Q14995 579 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 ZNF750Q32MQ0 723 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 LEXMQ3ZCV2 418 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 FRMPD2BQ6IN97 320 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 ABHD17CQ6PCB6 329 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 FCGR1BQ92637 280 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 LGALS12Q96DT0 336 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 OTUB1Q96FW1 271 aaPredicted RBP17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 MAPKAP1Q9BPZ7 522 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 ZCCHC3Q9NUD5 404 aaKnown RBP17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 P2RX2Q9UBL9 471 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 SEC14L3Q9UDX4 400 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 DSPPQ9NZW4 1301 aa17.52■□□□□ 0.4
PRPF40B-208ENST00000548436 CLDN24A6NM45 220 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 KCNJ13O60928 360 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 ADAM23O75077 832 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 ALPPL2P10696 532 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 COL9A1P20849 921 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 HIST1H1TP22492 207 aaPredicted RBP17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 ELAVL4P26378 380 aaKnown RBP17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 NTSR1P30989 418 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 DUSP2Q05923 314 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 TCEA2Q15560 299 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 GPR19Q15760 415 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 MRM1Q6IN84 353 aaKnown RBP17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 DEF8Q6ZN54 512 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 BTLAQ7Z6A9 289 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 IGFN1Q86VF2 1251 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 ACOT4Q8N9L9 421 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 DRAXINQ8NBI3 349 aaPredicted RBP17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 SLC38A4Q969I6 547 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 SCARF2Q96GP6 870 aaPredicted RBP17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 ZNF607Q96SK3 696 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 FAIM2Q9BWQ8 316 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 BTBD2Q9BX70 525 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 KCNK12Q9HB15 430 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 PALMDQ9NP74 551 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 MS4A12Q9NXJ0 267 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 TRPC4Q9UBN4 977 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 GPC6Q9Y625 555 aaPredicted RBP17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 DNAH14Q0VDD8 3507 aa17.52■□□□□ 0.39
PRPF40B-208ENST00000548436 SPTBN5Q9NRC6 3674 aaKnown RBP17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 POM121BA6NF01 834 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 CACNB4O00305 520 aaPredicted RBP17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 ERAL1O75616 437 aaKnown RBP17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 NADKO95544 446 aaPredicted RBP17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 EML2O95834 649 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 ATP5A1P25705 553 aaKnown RBP17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 LRRC32Q14392 662 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 TOR1AIP1Q5JTV8 583 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 ATAT1Q5SQI0 421 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 PPP2R2DQ66LE6 453 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 VMP1Q96GC9 406 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 DHRS1Q96LJ7 313 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 BBS4Q96RK4 519 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 GABRG3Q99928 467 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 C1QTNF7Q9BXJ2 289 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 REV1Q9UBZ9 1251 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 ENOPH1Q9UHY7 261 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 A0A1W2PQF6 199 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 A0A1W2PS29 197 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 NR2F1P10589 423 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 POU1F1P28069 291 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 CNR2P34972 360 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 AHRP35869 848 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 PRKAG1P54619 331 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 CDC42P60953 191 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 ABATP80404 500 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 ST3GAL4Q11206 333 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 TIGD6Q17RP2 521 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 C18orf63Q68DL7 685 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 IL17RCQ8NAC3 791 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 OR2L5Q8NG80 312 aa17.51■□□□□ 0.39
PRPF40B-208ENST00000548436 SUN3Q8TAQ9 357 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms