RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 SPO11Q9Y5K1 396 aa11.97□□□□□ -0.49
COL4A6-209ENST00000545689 TCRBV3S1A0A5B6 114 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 CSTBP04080 98 aaKnown RBP11.96□□□□□ -0.49
COL4A6-209ENST00000545689 VAMP2P63027 116 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 AAK1Q2M2I8 961 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 PKDCCQ504Y2 493 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 LARP4Q71RC2 724 aaKnown RBP eCLIP11.96□□□□□ -0.49
COL4A6-209ENST00000545689 ARHGAP12Q8IWW6 846 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 MFSD2AQ8NA29 543 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 C12orf4Q9NQ89 552 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 AGPAT4Q9NRZ5 378 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 USP3Q9Y6I4 520 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 MYH11P35749 1972 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 HTR3EA5X5Y0 456 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 SRCP12931 536 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 PORP16435 677 aaPredicted RBP11.96□□□□□ -0.49
COL4A6-209ENST00000545689 GABRA3P34903 492 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 LRRTM3Q86VH5 581 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 RASGRP3Q8IV61 690 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 MS4A15Q8N5U1 240 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 HAVCR2Q8TDQ0 301 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 PDLIM5Q96HC4 596 aaKnown RBP11.96□□□□□ -0.49
COL4A6-209ENST00000545689 F2RL3Q96RI0 385 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 SOX17Q9H6I2 414 aaPredicted RBP11.96□□□□□ -0.49
COL4A6-209ENST00000545689 METTL7AQ9H8H3 244 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 EBF1Q9UH73 591 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 TNFRSF10BO14763 440 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 GKN3PP0CG01 181 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 ITGAMP11215 1152 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 SLC6A9P48067 706 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 CDKL1Q00532 357 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 BORAQ6PGQ7 559 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 PAPD5Q8NDF8 572 aaKnown RBP11.96□□□□□ -0.49
COL4A6-209ENST00000545689 OR13J1Q8NGT2 312 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 HSPA12BQ96MM6 686 aa11.96□□□□□ -0.49
COL4A6-209ENST00000545689 DPH2Q9BQC3 489 aaPredicted RBP11.96□□□□□ -0.49
COL4A6-209ENST00000545689 GLOD5A6NK44 160 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 ANHXE9PGG2 379 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 LDB2O43679 373 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 RNH1P13489 461 aaKnown RBP11.96□□□□□ -0.5
COL4A6-209ENST00000545689 S1PR1P21453 382 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 CD40LGP29965 261 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 DPP6P42658 865 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 GCGRP47871 477 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 HTR6P50406 440 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 PPP5CP53041 499 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 PRKCDQ05655 676 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 LRP8Q14114 963 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 SCGB2B2Q4G0G5 96 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 ZNF648Q5T619 568 aaPredicted RBP11.96□□□□□ -0.5
COL4A6-209ENST00000545689 LETMD1Q6P1Q0 360 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 SAMD12Q8N8I0 201 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 SGTBQ96EQ0 304 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 SECISBP2Q96T21 854 aaKnown RBP11.96□□□□□ -0.5
COL4A6-209ENST00000545689 METTL8Q9H825 291 aaKnown RBP11.96□□□□□ -0.5
COL4A6-209ENST00000545689 ACOT13Q9NPJ3 140 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 ASB6Q9NWX5 421 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 GRXCR1A8MXD5 290 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 RNF13O43567 381 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 CSTAP01040 98 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 KLK3P07288 261 aaPredicted RBP11.96□□□□□ -0.5
COL4A6-209ENST00000545689 STSP08842 583 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 SYN1P17600 705 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 CELP19835 753 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 GNG2P59768 71 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 MS4A2Q01362 244 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 ELOAQ14241 798 aaKnown RBP11.96□□□□□ -0.5
COL4A6-209ENST00000545689 C17orf99Q6UX52 265 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 RASGEF1AQ8N9B8 481 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 GATA6Q92908 595 aa11.96□□□□□ -0.5
COL4A6-209ENST00000545689 A0A1B0GVT2 93 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 VILLO15195 856 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 RAB28P51157 221 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 E2F1Q01094 437 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 PLEKHN1Q494U1 663 aaPredicted RBP11.95□□□□□ -0.5
COL4A6-209ENST00000545689 CLLU1OSQ5K130 101 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 COMMD6Q7Z4G1 85 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 HOXD1Q9GZZ0 328 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 DCAF13Q9NV06 445 aaKnown RBP11.95□□□□□ -0.5
COL4A6-209ENST00000545689 SCML1Q9UN30 329 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 TEX13CA0A0J9YWL9 993 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 C2orf92A0A1B0GVN3 265 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 FAM221BA6H8Z2 402 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 ZNF878C9JN71 531 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 KLF8O95600 359 aaPredicted RBP11.95□□□□□ -0.5
COL4A6-209ENST00000545689 IST1P53990 364 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 SELENOWP63302 87 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 TMEM107Q6UX40 140 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 IQCF2Q8IXL9 164 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 NETO1Q8TDF5 533 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 SMPDL3BQ92485 455 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 MOCOSQ96EN8 888 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 TRMT2BQ96GJ1 504 aaKnown RBP11.95□□□□□ -0.5
COL4A6-209ENST00000545689 TMEM19Q96HH6 336 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 BMFQ96LC9 184 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 CNN2Q99439 309 aaKnown RBP11.95□□□□□ -0.5
COL4A6-209ENST00000545689 FEVQ99581 238 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 MTHFD2LQ9H903 347 aaPredicted RBP11.95□□□□□ -0.5
COL4A6-209ENST00000545689 TIGARQ9NQ88 270 aa11.95□□□□□ -0.5
COL4A6-209ENST00000545689 ASB4Q9Y574 426 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms