RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TRPM6Q9BX84 2022 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 LILRB5O75023 590 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 ST8SIA6P61647 398 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 LHFPL3Q86UP9 236 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 SLAIN1Q8ND83 568 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 REPS1Q96D71 796 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 C16orf58Q96GQ5 468 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 LRR1Q96L50 414 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 PLA2G12AQ9BZM1 189 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 KLHL31Q9H511 634 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 PLSCR3Q9NRY6 295 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 CNIH4Q9P003 139 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 PLEKHM1Q9Y4G2 1056 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 NARSO43776 548 aaKnown RBP14.25□□□□□ -0.13
USP28-214ENST00000545540 NCR1O76036 304 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 KRT75O95678 551 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 ADH1AP07327 375 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 CEBPBP17676 345 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 ETV5P41161 510 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 CCT3P49368 545 aaKnown RBP14.25□□□□□ -0.13
USP28-214ENST00000545540 ETV1P50549 477 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 CSNK2BP67870 215 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 UBE3AQ05086 875 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 LASP1Q14847 261 aaKnown RBP14.25□□□□□ -0.13
USP28-214ENST00000545540 ARMC4Q5T2S8 1044 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 PODNL1Q6PEZ8 512 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 SLC9A6Q92581 669 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 C1GALT1C1Q96EU7 318 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 ART5Q96L15 291 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 SGPP1Q9BX95 441 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 RACGAP1Q9H0H5 632 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 TMEM38AQ9H6F2 299 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 SMURF1Q9HCE7 757 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 SPIN1Q9Y657 262 aaPredicted RBP14.25□□□□□ -0.13
USP28-214ENST00000545540 SERTM1A2A2V5 107 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 LIMS1P48059 325 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 HNRNPA0Q13151 305 aaKnown RBP14.25□□□□□ -0.13
USP28-214ENST00000545540 FLYWCH1Q4VC44 716 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 TYW3Q6IPR3 259 aaKnown RBP14.25□□□□□ -0.13
USP28-214ENST00000545540 LAS2Q8IYD9 372 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 LRRC56Q8IYG6 542 aaPredicted RBP14.25□□□□□ -0.13
USP28-214ENST00000545540 CCDC116Q8IYX3 515 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 IL17RDQ8NFM7 739 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 OR6T1Q8NGN1 323 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 ITPKCQ96DU7 683 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 RSPRY1Q96DX4 576 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 CPNE5Q9HCH3 593 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 MYNNQ9NPC7 610 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 THSD1Q9NS62 852 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 PEX16Q9Y5Y5 336 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 TTC36A6NLP5 189 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 TAF4O00268 1085 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 PDPK1O15530 556 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 COQ9O75208 318 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 H1F0P07305 194 aaKnown RBP14.25□□□□□ -0.13
USP28-214ENST00000545540 CLCNKAP51800 687 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 SLAMF1Q13291 335 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 PDE7AQ13946 482 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 GINS1Q14691 196 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 GOT1L1Q8NHS2 421 aaPredicted RBP14.25□□□□□ -0.13
USP28-214ENST00000545540 HOXD1Q9GZZ0 328 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 OR51I1Q9H343 314 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 ALPK2Q86TB3 2170 aa14.25□□□□□ -0.13
USP28-214ENST00000545540 OBSL1O75147 1896 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 ALPK3Q96L96 1907 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 DVL2O14641 736 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 IFNA14P01570 189 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 APOA1P02647 267 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 EPHX1P07099 455 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 UQCRC2P22695 453 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 SOX18P35713 384 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 ALDH6A1Q02252 535 aaKnown RBP14.24□□□□□ -0.13
USP28-214ENST00000545540 PGBD2Q6P3X8 592 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 ZER1Q7Z7L7 766 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 NLRP8Q86W28 1048 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 C17orf64Q86WR6 236 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 ASB15Q8WXK1 588 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 ZNF717Q9BY31 904 aaPredicted RBP14.24□□□□□ -0.13
USP28-214ENST00000545540 SP140LQ9H930 580 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 ZCCHC3Q9NUD5 404 aaKnown RBP14.24□□□□□ -0.13
USP28-214ENST00000545540 FBXW2Q9UKT8 454 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 A0A1B0GVC2 190 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 A0A1W2PQ09 198 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 A6NIN4 97 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 PGRMC2O15173 223 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 OSMP13725 252 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 MMP11P24347 488 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 PTX3P26022 381 aaPredicted RBP14.24□□□□□ -0.13
USP28-214ENST00000545540 SOX9P48436 509 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 CLDN2P57739 230 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 DCDC1P59894 354 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 ZNF45Q02386 682 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 FAM131AQ6UXB0 335 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 FCRL4Q96PJ5 515 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 LHX9Q9NQ69 397 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 IMP3Q9NV31 184 aaKnown RBP14.24□□□□□ -0.13
USP28-214ENST00000545540 CXXC1Q9P0U4 656 aaPredicted RBP14.24□□□□□ -0.13
USP28-214ENST00000545540 UGT2A1Q9Y4X1 527 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 TRBV23OR9-2A0A075B6M9 112 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 OR52A4PA6NMU1 304 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms