RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PAGE2BQ5JRK9 111 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 DEPDC1Q5TB30 811 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 DESI1Q6ICB0 168 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 MED27Q6P2C8 311 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 SYDE1Q6ZW31 735 aaPredicted RBP14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 ISCA2Q86U28 154 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 MYRIPQ8NFW9 859 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 UBTD2Q8WUN7 234 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 RMND5BQ96G75 393 aaPredicted RBP14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 KRT12Q99456 494 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 MTERF1Q99551 399 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 DOHHQ9BU89 302 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 ROGDIQ9GZN7 287 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 SAYSD1Q9NPB0 183 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 ACKR4Q9NPB9 350 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 B4GALT7Q9UBV7 327 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 BOKQ9UMX3 212 aaPredicted RBP14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 SLC6A5Q9Y345 797 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 ASB4Q9Y574 426 aa14.18□□□□□ -0.14
CLSTN3-213ENST00000541953 C15orf38-AP3S2A0A0A6YYH1 394 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 A0A1W2PPR1 153 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 A0A1W2PR48 441 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 FAM159BA6NKW6 160 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 CT62P0C5K7 136 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 COX7A2P14406 83 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 GABRA1P14867 456 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 STMN1P16949 149 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 TCP1P17987 556 aaKnown RBP14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 GDF1P27539 372 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 ASCL1P50553 236 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 RAB10P61026 200 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 ATP6V0D1P61421 351 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 CBLBQ13191 982 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 SPRED3Q2MJR0 410 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 MRM1Q6IN84 353 aaKnown RBP14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 GRHL2Q6ISB3 625 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 PLXDC2Q6UX71 529 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 PAMR1Q6UXH9 720 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 GPR180Q86V85 440 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 KRTAP1-3Q8IUG1 177 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 ST13P4Q8IZP2 240 aaPredicted RBP14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 SRFBP1Q8NEF9 429 aaKnown RBP14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 WFDC11Q8NEX6 87 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 CMTM7Q96FZ5 175 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 TIMP4Q99727 224 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 DPH5Q9H2P9 285 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 UBQLN3Q9H347 655 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 NSMCE4AQ9NXX6 385 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 NUDT4Q9NZJ9 180 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 SPACA6W5XKT8 324 aa14.17□□□□□ -0.14
CLSTN3-213ENST00000541953 A0A0A6YYD5 115 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 SUPT3HB4E1H0 165 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 K7EPI3 171 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 SUPT3HO75486 399 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 ACSL3O95573 720 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 AIFM1O95831 613 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 GBAP04062 536 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 BSGP35613 385 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 IRF9Q00978 393 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 HIST2H2ACQ16777 129 aaPredicted RBP14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 FBXL19-AS1Q494R0 122 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 HIST2H2AA3Q6FI13 130 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 RNF111Q6ZNA4 994 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 CHSY3Q70JA7 882 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 Q71RC1 249 aaPredicted RBP14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 PRR22Q8IZ63 422 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 ZCCHC7Q8N3Z6 543 aaKnown RBP14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 SLC15A4Q8N697 577 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 CHDHQ8NE62 594 aaPredicted RBP14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 LINC01560Q8TB33 94 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 DIO2Q92813 273 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 RNASE6Q93091 150 aaKnown RBP14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 TSPAN17Q96FV3 270 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 RBM18Q96H35 190 aaKnown RBP14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 CPNE1Q99829 537 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 EPB41L4BQ9H329 900 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 SLC24A3Q9HC58 644 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 PRM3Q9NNZ6 103 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 TEX10Q9NXF1 929 aaPredicted RBP14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 OPTCQ9UBM4 332 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 DTX4Q9Y2E6 619 aa14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 ANK3Q12955 4377 aaKnown RBP14.16□□□□□ -0.14
CLSTN3-213ENST00000541953 HSPB2A8KAH6 182 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 KERAO60938 352 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 ATE1O95260 518 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 GPR75O95800 540 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 EPPINO95925 133 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 DNASE1P24855 282 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 GP5P40197 560 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 PIK3CGP48736 1102 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 RAP1GDS1P52306 607 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 PPP2R2AP63151 447 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 PCDH1Q08174 1060 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 HSPB2Q16082 182 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 EIPR1Q53HC9 387 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 SLC29A4Q7RTT9 530 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 CENPLQ8N0S6 344 aaPredicted RBP14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 LIX1Q8N485 282 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 TEX9Q8N6V9 391 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 SIMC1Q8NDZ2 872 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms