RNA–Protein interactions for RNA: ENST00000541615.5

SNHG1-218, Transcript of small nucleolar RNA host gene 1, human

TSL 5 BASIC

Gene SNHG1, Length 748 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-218	ENST00000541615	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	GPR151	Q8TDV0	419 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	C16orf78	Q8WTQ4	265 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	CANT1	Q8WVQ1	401 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	BRI3BP	Q8WY22	251 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	ACOT12	Q8WYK0	555 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	LPAR1	Q92633	364 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	EXT2	Q93063	718 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	CMBL	Q96DG6	245 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	MALSU1	Q96EH3	234 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	SMIM12	Q96EX1	92 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	NUDT11	Q96G61	164 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	MARS2	Q96GW9	593 aa	Known RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	TPD52L3	Q96J77	140 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	PIWIL1	Q96J94	861 aa	Known RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	FCRL1	Q96LA6	429 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	MBOAT7	Q96N66	472 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	SPATA13	Q96N96	652 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	NT5C1B	Q96P26	610 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	PCDHB18P	Q96TA0	734 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	MTERF1	Q99551	399 aa	Known RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	S100A13	Q99584	98 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	KLF6	Q99612	283 aa	Predicted RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	SDHC	Q99643	169 aa	Predicted RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	CPNE1	Q99829	537 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	PRRT1	Q99946	306 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	AIF1L	Q9BQI0	150 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	CHCHD6	Q9BRQ6	235 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	TRMO	Q9BU70	441 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	BEX2	Q9BXY8	128 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	TEX101	Q9BY14	249 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	NLN	Q9BYT8	704 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	SLC29A3	Q9BZD2	475 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	PRRG3	Q9BZD7	231 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	THAP2	Q9H0W7	228 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	C11orf54	Q9H0W9	315 aa	Predicted RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	PCED1A	Q9H1Q7	454 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	SEMA6C	Q9H3T2	930 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	EXO5	Q9H790	373 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	SMURF1	Q9HCE7	757 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	ZFP64	Q9NPA5	681 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	CHST11	Q9NPF2	352 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	OSGEP	Q9NPF4	335 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	ZDHHC4	Q9NPG8	344 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	ACOT13	Q9NPJ3	140 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	GJB4	Q9NTQ9	266 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	POT1	Q9NUX5	634 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	FAM118A	Q9NWS6	357 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	PGPEP1	Q9NXJ5	209 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	GAR1	Q9NY12	217 aa	Known RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	PDP1	Q9P0J1	537 aa	Predicted RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	AKAP7	Q9P0M2	348 aa	Predicted RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	MARCO	Q9UEW3	520 aa	Predicted RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	FBXL2	Q9UKC9	423 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	ZNF490	Q9ULM2	529 aa	Predicted RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	CARHSP1	Q9Y2V2	147 aa	Known RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	MRPS18C	Q9Y3D5	142 aa	Known RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	CMAHP	Q9Y471	501 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	PCDHA11	Q9Y5I1	949 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	MTCH2	Q9Y6C9	303 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	USP3	Q9Y6I4	520 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	OAS3	Q9Y6K5	1087 aa	Known RBP	4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	C4A	P0C0L4	1744 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	C4B	P0C0L5	1744 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	PTPRJ	Q12913	1337 aa		4.96	□□□□□ -1.62
SNHG1-218	ENST00000541615	TAF1L	Q8IZX4	1826 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	LOC100130705	A0A1B0GUX0	176 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	SLC5A10	A0PJK1	596 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	TBC1D3B	A6NDS4	549 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	FABP12	A6NFH5	140 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	URAD	A6NGE7	173 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	CLCA1	A8K7I4	914 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	CDRT15L2	A8MXV6	281 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	SEC14L6	B5MCN3	397 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	DFFA	O00273	331 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	RFXAP	O00287	272 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	ZNF195	O14628	629 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	TP53I11	O14683	189 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	MRAS	O14807	208 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	MDM4	O15151	490 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	NKRF	O15226	690 aa	Known RBP eCLIP	4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	MBTPS2	O43462	519 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	SUV39H1	O43463	412 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	XPNPEP2	O43895	674 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	TLR5	O60602	858 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	PRAMEF2	O60811	474 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	PRAF2	O60831	178 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	CILP	O75339	1184 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	ENTPD3	O75355	529 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	KDM4B	O94953	1096 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	PRSS23	O95084	383 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	HP	P00738	406 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	RPLP1	P05386	114 aa	Known RBP	4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	PSAP	P07602	524 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	CYC1	P08574	325 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	HTR1A	P08908	422 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	ZNF14	P17017	642 aa	Predicted RBP	4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	ENG	P17813	658 aa		4.95	□□□□□ -1.62
SNHG1-218	ENST00000541615	RHCE	P18577	417 aa		4.95	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms