RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZNF98A6NK75 572 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 CCL22O00626 93 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 GPR182O15218 404 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 PFKPQ01813 784 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 SCGB2A2Q13296 93 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 ECM1Q16610 540 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 DBX2Q6ZNG2 339 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 IGDCC3Q8IVU1 814 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 GPR22Q99680 433 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 VNN3Q9NY84 501 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 PCDHB11Q9Y5F2 797 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 PCDHGA1Q9Y5H4 931 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 CNTNAP1P78357 1384 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 FKTNO75072 461 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 GABARAPO95166 117 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 TGFB1P01137 390 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 IL1AP01583 271 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 BCHEP06276 602 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 MRPL3P09001 348 aaKnown RBP8.4□□□□□ -1.06
YBX3-208ENST00000540447 PTAFRP25105 342 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 TAGLN2P37802 199 aaKnown RBP8.4□□□□□ -1.06
YBX3-208ENST00000540447 DIO3P55073 304 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 SNRPEP62304 92 aaKnown RBP8.4□□□□□ -1.06
YBX3-208ENST00000540447 USP41Q3LFD5 358 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 SLC25A52Q3SY17 297 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 CHRFAM7AQ494W8 412 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 CD276Q5ZPR3 534 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 APOBEC3HQ6NTF7 200 aaKnown RBP8.4□□□□□ -1.06
YBX3-208ENST00000540447 SLC27A4Q6P1M0 643 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 GDPD3Q7L5L3 318 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 SLC29A4Q7RTT9 530 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 SKA3Q8IX90 412 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 STEAP2Q8NFT2 490 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 OR5D16Q8NGK9 328 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 MOAP1Q96BY2 351 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 MYO19Q96H55 970 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 KCNA7Q96RP8 456 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 P2RY13Q9BPV8 354 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 CRLF2Q9HC73 371 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 DTLQ9NZJ0 730 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 DERAQ9Y315 318 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 KPTNQ9Y664 436 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 MYH10P35580 1976 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 TMEM94Q12767 1356 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 C20orf202A1L168 122 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 METTL15A6NJ78 407 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 A8MXE2 369 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 CACNB4O00305 520 aaPredicted RBP8.4□□□□□ -1.06
YBX3-208ENST00000540447 SLC7A4O43246 635 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 CKBP12277 381 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 SOHLH1Q5JUK2 328 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 LYPD4Q6UWN0 246 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 C7orf61Q8IZ16 206 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 SLC7A13Q8TCU3 470 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 LRR1Q96L50 414 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 SLC30A3Q99726 388 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 AGO3Q9H9G7 860 aaKnown RBP8.4□□□□□ -1.06
YBX3-208ENST00000540447 VAPAQ9P0L0 249 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 RIC1Q4ADV7 1423 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 ADCY10Q96PN6 1610 aa8.4□□□□□ -1.06
YBX3-208ENST00000540447 TSPAN11A1L157 253 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 IQCF5A8MTL0 148 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 CILPO75339 1184 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 OR2C1O95371 312 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 EGFRP00533 1210 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 GLO1Q04760 184 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 TBCEQ15813 527 aaPredicted RBP8.4□□□□□ -1.07
YBX3-208ENST00000540447 ACTBL2Q562R1 376 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 OR5B17Q8NGF7 314 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 PXYLP1Q8TE99 480 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 BORCS7Q96B45 105 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 RADILQ96JH8 1075 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 UHRF1Q96T88 793 aaPredicted RBP8.4□□□□□ -1.07
YBX3-208ENST00000540447 PIP5K1AQ99755 562 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 DDX31Q9H8H2 851 aaKnown RBP8.4□□□□□ -1.07
YBX3-208ENST00000540447 APMAPQ9HDC9 416 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 P2RX2Q9UBL9 471 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 SH3BGRL2Q9UJC5 107 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 FBXO24O75426 580 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 ICAM1P05362 532 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 CSF1P09603 554 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 GNRHRP30968 328 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 SHMT2P34897 504 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 ARL2P36404 184 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 DCTP40126 519 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 PTTG1IPP53801 180 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 WNT4P56705 351 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 POLR2LP62875 67 aaKnown RBP8.4□□□□□ -1.07
YBX3-208ENST00000540447 ST3GAL3Q11203 375 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 PLAG1Q6DJT9 500 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 NADSYN1Q6IA69 706 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 TSSK4Q6SA08 328 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 P4HA3Q7Z4N8 544 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 LRRC28Q86X40 367 aaPredicted RBP8.4□□□□□ -1.07
YBX3-208ENST00000540447 OR5AK3PQ8NH89 298 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 CDC6Q99741 560 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 HIPK2Q9H2X6 1198 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 TIMM13Q9Y5L4 95 aaPredicted RBP8.4□□□□□ -1.07
YBX3-208ENST00000540447 ABCC3O15438 1527 aa8.4□□□□□ -1.07
YBX3-208ENST00000540447 BICRAQ9NZM4 1560 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms