RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 PLPP1O14494 284 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 PROM1O43490 865 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 OR10H2O60403 315 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 UGDHO60701 494 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 SH3BGRLO75368 114 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 TRIM3O75382 744 aaPredicted RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 SUPT3HO75486 399 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 GPR75O95800 540 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 EPPINO95925 133 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 C1QAP02745 245 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 SLC35E2BP0CK96 405 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 EPB42P16452 691 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 PTX3P26022 381 aaPredicted RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 UQCRC1P31930 480 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 CEACAM8P31997 349 aaPredicted RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 HNRNPH2P55795 449 aaKnown RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 HERVK_113P63132 956 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 ERVK-8P63133 956 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 PPP2R2AP63151 447 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 PHEXP78562 749 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 CALCOCO2Q13137 446 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 EBPQ15125 230 aaKnown RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 SF3B4Q15427 424 aaKnown RBP eCLIP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 FLYWCH1Q4VC44 716 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 GRTP1Q5TC63 336 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 LIPJQ5W064 366 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 TMEM198Q66K66 360 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 MRM1Q6IN84 353 aaKnown RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 C3orf62Q6ZUJ4 267 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 MAATS1Q7Z4T9 603 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 TBC1D1Q86TI0 1168 aaPredicted RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 LACC1Q8IV20 430 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 PM20D2Q8IYS1 436 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 TAGAPQ8N103 731 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 RELL2Q8NC24 303 aaPredicted RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 RIT1Q92963 219 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 RNASE6Q93091 150 aaKnown RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 TP53INP1Q96A56 240 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 ZNF597Q96LX8 424 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 ALPK1Q96QP1 1244 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 GAL3ST4Q96RP7 486 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 SECISBP2Q96T21 854 aaKnown RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 SH3GL2Q99962 352 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 GPATCH1Q9BRR8 931 aaKnown RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 DOHHQ9BU89 302 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 SORBS1Q9BX66 1292 aaKnown RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 ERVK-6Q9BXR3 956 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 WWTR1Q9GZV5 400 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 SLC6A15Q9H2J7 730 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 SAYSD1Q9NPB0 183 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 LYARQ9NX58 379 aaKnown RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 PSD3Q9NYI0 1048 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 CRIM1Q9NZV1 1036 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 WHRNQ9P202 907 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 MTRF1LQ9UGC7 380 aaKnown RBP11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 ERVK-19Q9WJR5 959 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 PCDHGA11Q9Y5H2 935 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 NF1P21359 2839 aa11.03□□□□□ -0.64
CBX3P4-202ENST00000540428 A0A0A6YYD5 115 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 FAM187AA6NFU0 413 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 A6NNC1 897 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 SYCE1LA8MT33 242 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 H0YIV9 168 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 UBXN8O00124 270 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 TP53I11O14683 189 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 DIAPH2O60879 1101 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 SNX4O95219 450 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 CLPSP04118 112 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 LTA4HP09960 611 aaKnown RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 SLC35E2P0CK97 266 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 DNASE1P24855 282 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 GDF1P27539 372 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 CRABP2P29373 138 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 TMED10P49755 219 aaKnown RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 CRYZQ08257 329 aaKnown RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 DUSP8Q13202 625 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 CUL3Q13618 768 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 DDX39BQ13838 428 aaKnown RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 ZNF267Q14586 743 aaPredicted RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 DAZAP2Q15038 168 aaPredicted RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 RPS6KA2Q15349 733 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 ACSF3Q4G176 576 aaPredicted RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 RAPH1Q70E73 1250 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 CAMKMTQ7Z624 323 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 CCDC91Q7Z6B0 441 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 CTAGE3PQ8IX95 158 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 ZNF441Q8N8Z8 693 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 GOT1L1Q8NHS2 421 aaPredicted RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 RHEBL1Q8TAI7 183 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 REPS1Q96D71 796 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 MBD6Q96DN6 1003 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 HSPBAP1Q96EW2 488 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 JSRP1Q96MG2 331 aaPredicted RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 TIMP4Q99727 224 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 NAPGQ99747 312 aaPredicted RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 ERP44Q9BS26 406 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 ZNF717Q9BY31 904 aaPredicted RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 PRDM14Q9GZV8 571 aa11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 DDX31Q9H8H2 851 aaKnown RBP11.02□□□□□ -0.65
CBX3P4-202ENST00000540428 WDR41Q9HAD4 459 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms