RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 SLC29A4Q7RTT9 530 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 PACS2Q86VP3 889 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 NAT8LQ8N9F0 302 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 FAM45AQ8TCE6 357 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 PERPQ96FX8 193 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 FBXL20Q96IG2 436 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 DOCK7Q96N67 2140 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 ZFP3Q96NJ6 502 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 GNRHR2Q96P88 292 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 SECISBP2Q96T21 854 aaKnown RBP10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 CCL19Q99731 98 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 TM9SF2Q99805 663 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 ANGPTL4Q9BY76 406 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 PIGMQ9H3S5 423 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 EHD1Q9H4M9 534 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 GPRC5BQ9NZH0 403 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 C6orf203Q9P0P8 240 aaPredicted RBP10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 CORO1CQ9ULV4 474 aaPredicted RBP10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 C15orf41Q9Y2V0 281 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 TESMINQ9Y4I5 508 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 OARD1Q9Y530 152 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 NPFFR2Q9Y5X5 522 aa10.62□□□□□ -0.71
CLSTN3-209ENST00000539982 NPEPPSL1A6NEC2 478 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 CAPN14A8MX76 684 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 A8MXE2 369 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 CTIFO43310 598 aaKnown RBP10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 ACTL6AO96019 429 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 CYP4B1P13584 511 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 CPN1P15169 458 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 ZNF37AP17032 561 aaPredicted RBP10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 CPN2P22792 545 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 SLCO1A2P46721 670 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 NAGLUP54802 743 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 EEF1A1P68104 462 aaKnown RBP10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 TOMM20Q15388 145 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 EIPR1Q53HC9 387 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 SPANXN3Q5MJ09 141 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 DCST1Q5T197 706 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 TEDDM1Q5T9Z0 273 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 EEF1A1P5Q5VTE0 462 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 FNDC7Q5VTL7 733 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 TTC27Q6P3X3 843 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 TAGAPQ8N103 731 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 NKAPQ8N5F7 415 aaKnown RBP10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 BBOF1Q8ND07 529 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 SLC44A1Q8WWI5 657 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 RHBDF1Q96CC6 855 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 RILPQ96NA2 401 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 GAL3ST4Q96RP7 486 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 WWTR1Q9GZV5 400 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 FETUBQ9UGM5 382 aa10.61□□□□□ -0.71
CLSTN3-209ENST00000539982 OR6C76A6NM76 312 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 RNF212BA8MTL3 300 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 DEFB108AA8MXU0 73 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 CLGNO14967 610 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 ZSCAN12O43309 604 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 ZNF500O60304 480 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 PRAMEF4O60810 478 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 SCELO95171 688 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 ALOX15P16050 662 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 HIST1H1TP22492 207 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 SOX18P35713 384 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 MC3RP41968 323 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 MASP1P48740 699 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 DIO3P55073 304 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 SLC37A1P57057 533 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 FBXW4P57775 412 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 HERVK_113P63132 956 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 ERVK-8P63133 956 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 PLIN5Q00G26 463 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 GAB1Q13480 694 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 DOC2AQ14183 400 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 ZNF267Q14586 743 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 EBPQ15125 230 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 RPS6KA2Q15349 733 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 AP5B1Q2VPB7 878 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 TMEM35AQ53FP2 167 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 WIPI1Q5MNZ9 446 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 PRAMEF9Q5VWM5 478 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 BICRALQ6AI39 1079 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 TMEM64Q6YI46 380 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 RNF111Q6ZNA4 994 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 C20orf204Q6ZNR8 217 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 ST13P4Q8IZP2 240 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 C17orf53Q8N3J3 647 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 PPP1R14CQ8TAE6 165 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 SPPL2AQ8TCT8 520 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 DOK4Q8TEW6 326 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 TANKQ92844 425 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 WNT2BQ93097 391 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 TP53INP1Q96A56 240 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 INTS12Q96CB8 462 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 WDR34Q96EX3 536 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 PTCD3Q96EY7 689 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 CERS2Q96G23 380 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 WFIKKN1Q96NZ8 548 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 UCN2Q96RP3 112 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 TUBA1CQ9BQE3 449 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 NAT9Q9BTE0 207 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 EFCAB11Q9BUY7 163 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms