RNA–Protein interactions for RNA: ENST00000529856.5

CCDC90B-216, Transcript of coiled-coil domain containing 90B, humanhuman

TSL 3

Gene CCDC90B, Length 1,039 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC90B-216ENST00000529856 SPRED3Q2MJR0 410 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 PRR30Q53SZ7 412 aaPredicted RBP11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 SH2D4BQ5SQS7 431 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 ZNF468Q5VIY5 522 aaPredicted RBP11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 MDS2Q8NDY4 140 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 PPP1R14CQ8TAE6 165 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 SUN3Q8TAQ9 357 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 DOK4Q8TEW6 326 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 THAP3Q8WTV1 239 aaPredicted RBP11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 TWIST2Q8WVJ9 160 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 FBXL20Q96IG2 436 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 ART5Q96L15 291 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 SIGLEC12Q96PQ1 595 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 BARD1Q99728 777 aaKnown RBP11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 TRIM45Q9H8W5 580 aaPredicted RBP11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 CXorf21Q9HAI6 301 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 C1orf109Q9NX04 203 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 ANKRD10Q9NXR5 420 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 MYOTQ9UBF9 498 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 COPS7AQ9UBW8 275 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 ZDHHC2Q9UIJ5 367 aa11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 WBP11Q9Y2W2 641 aaKnown RBP11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 YARS2Q9Y2Z4 477 aaKnown RBP11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 COPG1Q9Y678 874 aaKnown RBP11.78□□□□□ -0.52
CCDC90B-216ENST00000529856 CROCCQ5TZA2 2017 aa11.77□□□□□ -0.52
CCDC90B-216ENST00000529856 TMEM120BA0PK00 339 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 TMEM114B3SHH9 223 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ITM2AO43736 263 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ITGA10O75578 1167 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ERAL1O75616 437 aaKnown RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 NEURL1O76050 574 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 WISP1O95388 367 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 NEFHP12036 1026 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 H2AFXP16104 143 aaPredicted RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 CSNK2A2P19784 350 aaPredicted RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 FEN1P39748 380 aaKnown RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 CYB561P49447 251 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 HLCSP50747 726 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 HK2P52789 917 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 WDR4P57081 412 aaKnown RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ABCE1P61221 599 aaKnown RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ERVK-8P63133 956 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 OC90Q02509 493 aaPredicted RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ZNF763Q0D2J5 394 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 OR1C1Q15619 314 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ZNF750Q32MQ0 723 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 HHATQ5VTY9 493 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 SPINK14Q6IE38 97 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 NOXRED1Q6NXP6 359 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 C16orf47Q6ZP98 133 aaPredicted RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 HORMAD2Q8N7B1 307 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ANKRD42Q8N9B4 389 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 OR5L2Q8NGL0 311 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 OR2T11Q8NH01 316 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 AGR3Q8TD06 166 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 KLHL29Q96CT2 875 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 CNRIP1Q96F85 164 aaPredicted RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ZNF681Q96N22 645 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 CNPPD1Q9BV87 410 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 LIN28AQ9H9Z2 209 aaKnown RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 LRTM1Q9HBL6 345 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ASF1BQ9NVP2 202 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 LRFN1Q9P244 771 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 UTS2RQ9UKP6 389 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 ERVK-19Q9WJR5 959 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 NTNG1Q9Y2I2 539 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 POLR3HQ9Y535 204 aaPredicted RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 PCDHGB6Q9Y5F9 930 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 PRRC2CQ9Y520 2896 aaKnown RBP11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 SHANK1Q9Y566 2161 aa11.77□□□□□ -0.53
CCDC90B-216ENST00000529856 SPENQ96T58 3664 aaKnown RBP11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 WWP2O00308 870 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 PIP5K1BO14986 540 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 LSM1O15116 133 aaKnown RBP11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 LYPLA1O75608 230 aaPredicted RBP11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 OR2J2O76002 312 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 SNUPNO95149 360 aaKnown RBP11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 HSPA4LO95757 839 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 CLPSP04118 112 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 ATP1B1P05026 303 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 SP1P08047 785 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 CT62P0C5K7 136 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 NT5EP21589 574 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 BGNP21810 368 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 GRK2P25098 689 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 SSR4P51571 173 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 C2orf80Q0P641 193 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 FUT7Q11130 342 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 NR6A1Q15406 480 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 INAQ16352 499 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 RFTN2Q52LD8 501 aaPredicted RBP11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 ZNF766Q5HY98 468 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 AGBL2Q5U5Z8 902 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 FAM71E1Q6IPT2 247 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 RNF111Q6ZNA4 994 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 HDXQ7Z353 690 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 ZNF227Q86WZ6 799 aa11.76□□□□□ -0.53
CCDC90B-216ENST00000529856 GALNT12Q8IXK2 581 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms