RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PRSS41Q7RTY9 318 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 CYP4Z1Q86W10 505 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 SDR16C5Q8N3Y7 309 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 METTL25Q8N6Q8 603 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 C19orf47Q8N9M1 422 aaKnown RBP19.51■□□□□ 0.71
VPS28-209ENST00000528142 MIPOL1Q8TD10 442 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 ELP4Q96EB1 424 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 MAGED4Q96JG8 741 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 DUSP15Q9H1R2 295 aaPredicted RBP19.51■□□□□ 0.71
VPS28-209ENST00000528142 REEP1Q9H902 201 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 ZNF451Q9Y4E5 1061 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 EME2A4GXA9 379 aaPredicted RBP19.5■□□□□ 0.71
VPS28-209ENST00000528142 RECKO95980 971 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 C9P02748 559 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 TFAP2AP05549 437 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 FHP07954 510 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 CDH3P22223 829 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 CAPZBP47756 277 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 OR1E2P47887 323 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 VSX2P58304 361 aaPredicted RBP19.5■□□□□ 0.71
VPS28-209ENST00000528142 ZC3H12BQ5HYM0 836 aaKnown RBP19.5■□□□□ 0.71
VPS28-209ENST00000528142 SZRD1Q7Z422 152 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 ARHGEF39Q8N4T4 335 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 SMYD1Q8NB12 490 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 OR56A1Q8NGH5 318 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 OR5D16Q8NGK9 328 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 OR9A2Q8NGT5 310 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 MUS81Q96NY9 551 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 EPYCQ99645 322 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 RSPO3Q9BXY4 272 aaPredicted RBP19.5■□□□□ 0.71
VPS28-209ENST00000528142 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.5■□□□□ 0.71
VPS28-209ENST00000528142 C3orf18Q9UK00 162 aa19.5■□□□□ 0.71
VPS28-209ENST00000528142 CACNA1IQ9P0X4 2223 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 EMC8O43402 210 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 GALR3O60755 368 aaPredicted RBP19.49■□□□□ 0.71
VPS28-209ENST00000528142 MFN2O95140 757 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 CLPTM1O96005 669 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 HMGN2P05204 90 aaKnown RBP19.49■□□□□ 0.71
VPS28-209ENST00000528142 PROS1P07225 676 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 CD247P20963 164 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 DAPP51397 102 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 PRKAG1P54619 331 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 OLR1P78380 273 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 SIM1P81133 766 aaPredicted RBP19.49■□□□□ 0.71
VPS28-209ENST00000528142 KCNAB2Q13303 367 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 DUSP7Q16829 419 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 DEFB133Q30KQ1 61 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 RFX4Q33E94 735 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 TTC23Q5W5X9 447 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 TTC33Q6PID6 262 aaPredicted RBP19.49■□□□□ 0.71
VPS28-209ENST00000528142 SLC44A2Q8IWA5 706 aaPredicted RBP19.49■□□□□ 0.71
VPS28-209ENST00000528142 GEMIN6Q8WXD5 167 aaKnown RBP19.49■□□□□ 0.71
VPS28-209ENST00000528142 ZNF300Q96RE9 604 aaPredicted RBP19.49■□□□□ 0.71
VPS28-209ENST00000528142 ZNF347Q96SE7 839 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 CLK4Q9HAZ1 481 aaKnown RBP19.49■□□□□ 0.71
VPS28-209ENST00000528142 IL21RQ9HBE5 538 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 UCKL1Q9NWZ5 548 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 P2RX2Q9UBL9 471 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 PCDHGB3Q9Y5G1 929 aa19.49■□□□□ 0.71
VPS28-209ENST00000528142 TRIM64A6NGJ6 449 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 ZNF860A6NHJ4 632 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 SLC9B1P1A6NJY1 282 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 TLX1P31314 330 aaPredicted RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 PIGAP37287 484 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 MC3RP41968 323 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 KHKP50053 298 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 SYPL1Q16563 259 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 CYP27C1Q4G0S4 372 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 KCTD21Q4G0X4 260 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 KDM4DQ6B0I6 523 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 MAMSTRQ6ZN01 415 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 SAMD14Q8IZD0 417 aaPredicted RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 DNAJC22Q8N4W6 341 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 TSPAN14Q8NG11 270 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 OR4K14Q8NGD5 310 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 APOBEC4Q8WW27 367 aaKnown RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 XAGE5Q8WWM1 108 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 SLC38A3Q99624 504 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 CCDC3Q9BQI4 270 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 RUBCNLQ9H714 662 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 STARD5Q9NSY2 213 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 PDP1Q9P0J1 537 aaPredicted RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 TDRD6O60522 2096 aaKnown RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 A0A0C4DFX4 3053 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 BDP1A6H8Y1 2624 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 BCAT2O15382 392 aaPredicted RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 SDC3O75056 442 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 PIAS2O75928 621 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 PDE9AO76083 593 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 CTSBP07858 339 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 RRM2P31350 389 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 RPL5P46777 297 aaKnown RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 XKP51811 444 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 PRR5P85299 388 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 SIGLEC14Q08ET2 396 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 LASP1Q14847 261 aaKnown RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 LTB4RQ15722 352 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 LIN52Q52LA3 116 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 USP53Q70EK8 1073 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 MCATQ8IVS2 390 aaKnown RBP19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms