RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 GLT8D2Q9H1C3 349 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 POLR3FQ9H1D9 316 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC26A1Q9H2B4 701 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR52A5Q9H2C5 316 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 BLZF1Q9H2G9 400 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIGMQ9H3S5 423 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DPEP3Q9H4B8 488 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RGCCQ9H4X1 137 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM124BQ9H5Z6 455 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 AZI2Q9H6S1 392 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RANBP3Q9H6Z4 567 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM185BQ9H7F4 350 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPP1R3EQ9H7J1 279 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DCLRE1BQ9H816 532 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GEMIN7Q9H840 131 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 EVA1AQ9H8M9 152 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTHFD2LQ9H903 347 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MED20Q9H944 212 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACTR8Q9H981 624 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 VIPAS39Q9H9C1 493 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACTR5Q9H9F9 607 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPACA1Q9HBV2 294 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SGK2Q9HBY8 427 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCDH9Q9HC56 1237 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZFP14Q9HCL3 533 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 POLD4Q9HCU8 107 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRPC7Q9HCX4 862 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 WDR6Q9NNW5 1121 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DNAJC4Q9NNZ3 241 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TREM1Q9NP99 234 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MMP25Q9NPA2 562 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MYNNQ9NPC7 610 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NOX4Q9NPH5 578 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HINT3Q9NQE9 182 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HPS4Q9NQG7 708 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MRPL17Q9NRX2 175 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGPAT3Q9NRZ7 376 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACSS1Q9NUB1 689 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C20orf96Q9NUD7 363 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDX28Q9NUL7 540 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NUDT15Q9NV35 164 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTPAPQ9NVV4 582 aaKnown RBP eCLIP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MRPL22Q9NWU5 206 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC2A8Q9NY64 477 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CISD1Q9NZ45 108 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C1RLQ9NZP8 487 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NDUFA13Q9P0J0 144 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RCC2Q9P258 522 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 STOX2Q9P2F5 926 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 STX18Q9P2W9 335 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ERVK-18Q9QC07 812 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MBD2Q9UBB5 411 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTNNAL1Q9UBT7 734 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 COPS7AQ9UBW8 275 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SEC14L3Q9UDX4 400 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 STK39Q9UEW8 545 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 EPHA6Q9UF33 1036 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTRF1LQ9UGC7 380 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SERGEFQ9UGK8 458 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHRNA9Q9UGM1 479 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 IL20RAQ9UHF4 553 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC12A6Q9UHW9 1150 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANGPTL2Q9UKU9 493 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RNF150Q9ULK6 438 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF490Q9ULM2 529 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 BARX2Q9UMQ3 279 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCDHA7Q9UN72 937 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCDHA12Q9UN75 941 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPH3ALQ9UNE2 315 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PACSIN2Q9UNF0 486 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FOXJ3Q9UPW0 622 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SATB2Q9UPW6 733 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NIP7Q9Y221 180 aaKnown RBP eCLIP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RNF6Q9Y252 685 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 VDAC3Q9Y277 283 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIGLQ9Y2B2 252 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CA5BQ9Y2D0 317 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 WDR45Q9Y484 360 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 YIPF1Q9Y548 306 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLK4Q9Y5K2 254 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NPTNQ9Y639 398 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 BZW2Q9Y6E2 419 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 STON1Q9Y6Q2 735 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 V9GYY5 206 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ABCC4O15439 1325 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZMYM6O95789 1325 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SH3TC1Q8TE82 1336 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HEG1Q9ULI3 1381 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRAG1Q86YV5 1406 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTPRUQ92729 1446 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NOTCH2Q04721 2471 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NEURL4Q96JN8 1562 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPIAL4EA0A075B759 164 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGKV3D-15A0A087WSY6 115 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 A0A0A0MQY5 61 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRBV5-7A0A0A0MS05 114 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGKV6D-21A0A0A0MT36 114 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRAV25A0A0B4J276 109 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms