RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 DDX47Q9H0S4 455 aaKnown RBP13.46□□□□□ -0.25
TRAF4-212ENST00000498540 UBQLN3Q9H347 655 aa13.46□□□□□ -0.25
TRAF4-212ENST00000498540 RPF2Q9H7B2 306 aaKnown RBP13.46□□□□□ -0.25
TRAF4-212ENST00000498540 CNOT10Q9H9A5 744 aaKnown RBP13.46□□□□□ -0.25
TRAF4-212ENST00000498540 BEX4Q9NWD9 120 aaPredicted RBP13.46□□□□□ -0.25
TRAF4-212ENST00000498540 JKAMPQ9P055 326 aa13.46□□□□□ -0.25
TRAF4-212ENST00000498540 JRKLQ9Y4A0 524 aa13.46□□□□□ -0.25
TRAF4-212ENST00000498540 MED12Q93074 2177 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 GOLGA6L10A0A0M3HER8 536 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 MBD3L4A6NDZ8 208 aaPredicted RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 MBD3L3A6NE82 208 aaPredicted RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 MBD3L5A6NJ08 208 aaPredicted RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 KIAA1324LA8MWY0 1029 aaPredicted RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 DYRK3O43781 588 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 ACSL3O95573 720 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 CLPSP04118 112 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 HPNP05981 417 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 PCNAP12004 261 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 ALOX15P16050 662 aaPredicted RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 CTSSP25774 331 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 CDK9P50750 372 aaKnown RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 SLC37A1P57057 533 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 FBXW4P57775 412 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 TNFRSF17Q02223 184 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 IRF8Q02556 426 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 SLAMF1Q13291 335 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 LAPTM5Q13571 262 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 FRG1Q14331 258 aaKnown RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 ZNF267Q14586 743 aaPredicted RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 OR4D1Q15615 310 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 TMEM35AQ53FP2 167 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 PAGE2BQ5JRK9 111 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 FNDC7Q5VTL7 733 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 VASNQ6EMK4 673 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 RNF111Q6ZNA4 994 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 CXorf67Q86X51 503 aaPredicted RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 GPSM1Q86YR5 675 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 RNF175Q8N4F7 328 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 MBD3L2Q8NHZ7 208 aaPredicted RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 ACTRT1Q8TDG2 376 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 VPS39Q96JC1 886 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 RILPQ96NA2 401 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 MDFIQ99750 246 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 MCMBPQ9BTE3 642 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 UGT2B28Q9BY64 529 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 PHACTR1Q9C0D0 580 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 OR51B5Q9H339 312 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 ZNF395Q9H8N7 513 aaPredicted RBP13.45□□□□□ -0.26
TRAF4-212ENST00000498540 CAB39LQ9H9S4 337 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 POPDC3Q9HBV1 291 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 PRM3Q9NNZ6 103 aa13.45□□□□□ -0.26
TRAF4-212ENST00000498540 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.45□□□□□ -0.267e-6■■■□□ 16.5
TRAF4-212ENST00000498540 IQANK1A0A1B0GTG1 560 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 ANKRD33BA6NCL7 494 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 CD8B2A6NJW9 211 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 WASHC1A8K0Z3 465 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 CCNT2O60583 730 aaKnown RBP13.44□□□□□ -0.26
TRAF4-212ENST00000498540 PIAS1O75925 651 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 GOSR1O95249 250 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 LY6G6DO95868 133 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 BMP7P18075 431 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 OPRM1P35372 400 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 SOX18P35713 384 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 CASP2P42575 452 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 HNRNPH2P55795 449 aaKnown RBP13.44□□□□□ -0.26
TRAF4-212ENST00000498540 E2F2Q14209 437 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 FASTKD3Q14CZ7 662 aaKnown RBP13.44□□□□□ -0.26
TRAF4-212ENST00000498540 MORF4L2Q15014 288 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 RPS6KA2Q15349 733 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 TBCCQ15814 346 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 HIST2H2ACQ16777 129 aaPredicted RBP13.44□□□□□ -0.26
TRAF4-212ENST00000498540 SPRED3Q2MJR0 410 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 EIPR1Q53HC9 387 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 TBCELQ5QJ74 424 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 KHDRBS2Q5VWX1 349 aaKnown RBP13.44□□□□□ -0.26
TRAF4-212ENST00000498540 SHEQ5VZ18 495 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 HIST2H2AA3Q6FI13 130 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 OR4C11Q6IEV9 310 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 SULT1C3Q6IMI6 304 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 LAS2Q8IYD9 372 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 ST13P4Q8IZP2 240 aaPredicted RBP13.44□□□□□ -0.26
TRAF4-212ENST00000498540 CIARTQ8N365 385 aaPredicted RBP13.44□□□□□ -0.26
TRAF4-212ENST00000498540 ZNF441Q8N8Z8 693 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 C9orf106Q8NAJ2 232 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 PDPRQ8NCN5 879 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 C7orf57Q8NEG2 295 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 NUDT8Q8WV74 236 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 TANKQ92844 425 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 LRRC39Q96DD0 335 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 WDYHV1Q96HA8 205 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 GNRHR2Q96P88 292 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 OSBPL9Q96SU4 736 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 RHOJQ9H4E5 214 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 MOCS1Q9NZB8 636 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 CD274Q9NZQ7 290 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 PTBP2Q9UKA9 531 aaKnown RBP13.44□□□□□ -0.26
TRAF4-212ENST00000498540 PPP2R2CQ9Y2T4 447 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 C15orf41Q9Y2V0 281 aa13.44□□□□□ -0.26
TRAF4-212ENST00000498540 PHGDHO43175 533 aaKnown RBP13.43□□□□□ -0.26
TRAF4-212ENST00000498540 CCDC166P0CW27 439 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms