RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 CORO2AQ92828 525 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ERO1AQ96HE7 468 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 TNFRSF13CQ96RJ3 184 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 PLEKHA3Q9HB20 300 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ZNF581Q9P0T4 197 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 CGNQ9P2M7 1197 aaKnown RBP4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ZNF346Q9UL40 294 aaKnown RBP4.33□□□□□ -1.72
SF3B1-212ENST00000496458 HPCAL4Q9UM19 191 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ABCC1P33527 1531 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 PLEKHH2Q8IVE3 1493 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 MYOM3Q5VTT5 1437 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 KIAA1107Q9UPP5 1409 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 C5orf52A6NGY3 159 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 KLLNB2CW77 178 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 ACSL4O60488 711 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 MT-ND1P03886 318 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 SRD5A2P31213 254 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 TIA1P31483 386 aaKnown RBP eCLIP4.32□□□□□ -1.72
SF3B1-212ENST00000496458 SLC1A4P43007 532 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 OR3A1P47881 315 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 PEX3P56589 373 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 BACE1P56817 501 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 RPP38P78345 283 aaKnown RBP4.32□□□□□ -1.72
SF3B1-212ENST00000496458 NPRL3Q12980 569 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 INAQ16352 499 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 C3AR1Q16581 482 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 TMEM44Q2T9K0 475 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 SLC39A12Q504Y0 691 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 MUC21Q5SSG8 566 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 RNLSQ5VYX0 342 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 EMBQ6PCB8 327 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 SLC43A2Q8N370 569 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 ATAD1Q8NBU5 361 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 BRSK1Q8TDC3 778 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 FRAT1Q92837 279 aaPredicted RBP4.32□□□□□ -1.72
SF3B1-212ENST00000496458 CNDP1Q96KN2 507 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 ALKBH3Q96Q83 286 aaPredicted RBP4.32□□□□□ -1.72
SF3B1-212ENST00000496458 PRAM1Q96QH2 718 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 PINK1Q9BXM7 581 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 MINDY3Q9H8M7 445 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 ABCB8Q9NUT2 735 aa4.32□□□□□ -1.72
SF3B1-212ENST00000496458 ZFYVE16Q7Z3T8 1539 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 ATP10AO60312 1499 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 CAMSAP2Q08AD1 1489 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 A0A0B4J203 849 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 C2orf92A0A1B0GVN3 265 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 CLRN2A0PK11 232 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 FAM25EA8MYX2 175 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 E9PAM4 449 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 CACNB4O00305 520 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-212ENST00000496458 MCF2LO15068 1137 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 RIPK2O43353 540 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 SELENOFO60613 162 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 PEX11AO75192 247 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 PBLDP30039 288 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-212ENST00000496458 RPL9P32969 192 aaKnown RBP4.31□□□□□ -1.72
SF3B1-212ENST00000496458 ACAA2P42765 397 aaKnown RBP4.31□□□□□ -1.72
SF3B1-212ENST00000496458 KRTAP12-2P59991 146 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 STX1BP61266 288 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 FOLH1Q04609 750 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 CETN1Q12798 172 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 ABRQ12979 859 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 SHROOM1Q2M3G4 852 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-212ENST00000496458 HFEQ30201 348 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 POM121L1PQ3SYA9 428 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 HSP90AB3PQ58FF7 597 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 TEX35Q5T0J7 233 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 GBP6Q6ZN66 633 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 RFPL4BQ6ZWI9 263 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 BANPQ8N9N5 519 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 SMYD1Q8NB12 490 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 AGAP11Q8TF27 550 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 SHC3Q92529 594 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 BPIFA2Q96DR5 249 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 TSPYL1Q9H0U9 437 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 MTIF3Q9H2K0 278 aaKnown RBP4.31□□□□□ -1.72
SF3B1-212ENST00000496458 MARCH7Q9H992 704 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 POLE3Q9NRF9 147 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 CYP39A1Q9NYL5 469 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 FETUBQ9UGM5 382 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 UBQLN2Q9UHD9 624 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 CDH7Q9ULB5 785 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 EXOC7Q9UPT5 735 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 SMC3Q9UQE7 1217 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 SH3GLB1Q9Y371 365 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 KDM5CP41229 1560 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 ZMYM4Q5VZL5 1548 aa4.31□□□□□ -1.72
SF3B1-212ENST00000496458 CFAP65Q6ZU64 1925 aaKnown RBP4.31□□□□□ -1.72
SF3B1-212ENST00000496458 MAGI2Q86UL8 1455 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 MBD5Q9P267 1494 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 MLH3Q9UHC1 1453 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 FGD6Q6ZV73 1430 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 MIA2Q96PC5 1412 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 KIDINS220Q9ULH0 1771 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 SALL1Q9NSC2 1324 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 TRBV5-4A0A0C4DH59 114 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 CCDC169A6NNP5 214 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 AP3B1O00203 1094 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 VEGFDO43915 354 aa4.3□□□□□ -1.72
SF3B1-212ENST00000496458 OR6B1O95007 311 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms