RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 CCDC22O60826 627 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 CREG1O75629 220 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 CPMP14384 443 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 CD1EP15812 388 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 TNNI3P19429 210 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 CSNK2A2P19784 350 aaPredicted RBP16.1■□□□□ 0.17
LIME1-208ENST00000493265 NTSP30990 170 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 S100A3P33764 101 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 ATP4BP51164 291 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 POLR2JP52435 117 aaKnown RBP16.1■□□□□ 0.17
LIME1-208ENST00000493265 DUSP2Q05923 314 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 PDE7AQ13946 482 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 SPANXN4Q5MJ08 99 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 GK5Q6ZS86 529 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 ANKRD37Q7Z713 158 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 CCDC116Q8IYX3 515 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 CNRIP1Q96F85 164 aaPredicted RBP16.1■□□□□ 0.17
LIME1-208ENST00000493265 DGAT2Q96PD7 388 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 EFHD1Q9BUP0 239 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 DUSP26Q9BV47 211 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 DPH1Q9BZG8 443 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 ZNF385DQ9H6B1 395 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 CLMPQ9H6B4 373 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 ATAD3AQ9NVI7 634 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 MAPRE3Q9UPY8 281 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 PCDHGA6Q9Y5G7 932 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 SEC16AO15027 2179 aa16.1■□□□□ 0.17
LIME1-208ENST00000493265 IGKV3D-11A0A0A0MRZ8 115 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 CDC14CA4D256 554 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 IGHEP01854 428 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 PRKAR1AP10644 381 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 PORP16435 677 aaPredicted RBP16.09■□□□□ 0.17
LIME1-208ENST00000493265 DDX5P17844 614 aaKnown RBP16.09■□□□□ 0.17
LIME1-208ENST00000493265 WT1P19544 449 aaPredicted RBP16.09■□□□□ 0.17
LIME1-208ENST00000493265 NT5EP21589 574 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 KIR3DL1P43629 444 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 NCBP2P52298 156 aaKnown RBP eCLIP16.09■□□□□ 0.172e-18■■□□□ 12.4
LIME1-208ENST00000493265 PLIN5Q00G26 463 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 VAC14Q08AM6 782 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 SERTAD2Q14140 314 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 SSPNQ14714 243 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 TIGD2Q4W5G0 525 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 SFT2D3Q587I9 215 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 ATP1A1-AS1Q5TC04 95 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 MED25Q71SY5 747 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 LRRC25Q8N386 305 aaPredicted RBP16.09■□□□□ 0.17
LIME1-208ENST00000493265 CPSF7Q8N684 471 aaKnown RBP16.09■□□□□ 0.17
LIME1-208ENST00000493265 ADCY4Q8NFM4 1077 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 VPS33AQ96AX1 596 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 WBP1Q96G27 269 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 RBM18Q96H35 190 aaKnown RBP16.09■□□□□ 0.17
LIME1-208ENST00000493265 CLDN16Q9Y5I7 305 aa16.09■□□□□ 0.17
LIME1-208ENST00000493265 TCRBV16S1A1N1A0A5B0 115 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 FAM234BA2RU67 622 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 CFLARO15519 480 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 SEC24DO94855 1032 aaPredicted RBP16.08■□□□□ 0.16
LIME1-208ENST00000493265 MMP11P24347 488 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 PGDP52209 483 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 MANFP55145 182 aaKnown RBP16.08■□□□□ 0.16
LIME1-208ENST00000493265 KCNK10P57789 538 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 C21orf58P58505 322 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 SRSF11Q05519 484 aaKnown RBP16.08■□□□□ 0.16
LIME1-208ENST00000493265 HSPB3Q12988 150 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 KLF10Q13118 480 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 LTB4RQ15722 352 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 MPEG1Q2M385 716 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 DGAT2L6Q6ZPD8 337 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 ZNF551Q7Z340 670 aaPredicted RBP16.08■□□□□ 0.16
LIME1-208ENST00000493265 CPEB2Q7Z5Q1 589 aaKnown RBP16.08■□□□□ 0.16
LIME1-208ENST00000493265 PPP1R32Q7Z5V6 425 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 ANKRD46Q86W74 232 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 RAB43Q86YS6 212 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 FUNDC1Q8IVP5 155 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 GLB1L3Q8NCI6 653 aaPredicted RBP16.08■□□□□ 0.16
LIME1-208ENST00000493265 TTC9Q92623 222 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 TESCQ96BS2 214 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 COQ8BQ96D53 544 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 ZNF681Q96N22 645 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 OR52E6Q96RD3 313 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 CCNL2Q96S94 520 aaPredicted RBP16.08■□□□□ 0.16
LIME1-208ENST00000493265 BHLHE41Q9C0J9 482 aaPredicted RBP16.08■□□□□ 0.16
LIME1-208ENST00000493265 SLAMF7Q9NQ25 335 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 TAS2R7Q9NYW3 318 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 C19orf25Q9UFG5 118 aaPredicted RBP16.08■□□□□ 0.16
LIME1-208ENST00000493265 HS3ST3B1Q9Y662 390 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 CAPN7Q9Y6W3 813 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 MYO18BQ8IUG5 2567 aa16.08■□□□□ 0.16
LIME1-208ENST00000493265 A0A1W2PRB8 838 aa16.07■□□□□ 0.16
LIME1-208ENST00000493265 MYO1GB0I1T2 1018 aa16.07■□□□□ 0.16
LIME1-208ENST00000493265 SOCS6O14544 535 aa16.07■□□□□ 0.16
LIME1-208ENST00000493265 NKX2-8O15522 239 aa16.07■□□□□ 0.16
LIME1-208ENST00000493265 TBX19O60806 448 aa16.07■□□□□ 0.16
LIME1-208ENST00000493265 DCTN3O75935 186 aa16.07■□□□□ 0.16
LIME1-208ENST00000493265 CPSF4O95639 269 aaKnown RBP16.07■□□□□ 0.16
LIME1-208ENST00000493265 ABCB1P08183 1280 aaPredicted RBP16.07■□□□□ 0.16
LIME1-208ENST00000493265 SLC35E2P0CK97 266 aa16.07■□□□□ 0.16
LIME1-208ENST00000493265 PCSK2P16519 638 aa16.07■□□□□ 0.16
LIME1-208ENST00000493265 MPIP34949 423 aa16.07■□□□□ 0.16
LIME1-208ENST00000493265 GPC1P35052 558 aa16.07■□□□□ 0.16
LIME1-208ENST00000493265 STT3AP46977 705 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms