RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	ZNF324B	Q6AW86	544 aa	Predicted RBP	8.2	□□□□□ -1.1
USP4-213	ENST00000488520	PRMT9	Q6P2P2	845 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	PAGE2	Q7Z2X7	111 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	DDIAS	Q8IXT1	998 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	SIRT6	Q8N6T7	355 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	AMER2	Q8N7J2	671 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	GBP7	Q8N8V2	638 aa	Predicted RBP	8.2	□□□□□ -1.1
USP4-213	ENST00000488520	HUS1B	Q8NHY5	278 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	NT5C	Q8TCD5	201 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	NR4A3	Q92570	626 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF75CP	Q92670	426 aa	Predicted RBP	8.2	□□□□□ -1.1
USP4-213	ENST00000488520	FKBP10	Q96AY3	582 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	TM4SF19	Q96DZ7	209 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	MMAB	Q96EY8	250 aa	Predicted RBP	8.2	□□□□□ -1.1
USP4-213	ENST00000488520	MTERF1	Q99551	399 aa	Known RBP	8.2	□□□□□ -1.1
USP4-213	ENST00000488520	CCT7	Q99832	543 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	REXO4	Q9GZR2	422 aa	Known RBP	8.2	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF304	Q9HCX3	659 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	RAP2C	Q9Y3L5	183 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	TIMM22	Q9Y584	194 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	KLF2	Q9Y5W3	355 aa	Predicted RBP	8.2	□□□□□ -1.1
USP4-213	ENST00000488520	SPACA6	W5XKT8	324 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	NF1	P21359	2839 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF407	Q9C0G0	2248 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	DYTN	A2CJ06	578 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	FITM1	A5D6W6	292 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	LRIT2	A6NDA9	550 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	SLCO1B7	G3V0H7	640 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	PSMD12	O00232	456 aa	Predicted RBP	8.19	□□□□□ -1.1
USP4-213	ENST00000488520	MANBA	O00462	879 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	PPP6C	O00743	305 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	PCDH17	O14917	1159 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	DIAPH2	O60879	1101 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	SH3BGRL	O75368	114 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	PDYN	P01213	254 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	STATH	P02808	62 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	FREM3	P0C091	2139 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	HSD3B1	P14060	373 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	ALOX12	P18054	663 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	EPOR	P19235	508 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	HSD3B2	P26439	372 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	MST1	P26927	711 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	PTGER4	P35408	488 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	NEK2	P51955	445 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	PLA2G16	P53816	162 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	KRTAP10-9	P60411	292 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	RAB8A	P61006	207 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	RPS13	P62277	151 aa	Known RBP	8.19	□□□□□ -1.1
USP4-213	ENST00000488520	BTN3A2	P78410	334 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	OCA2	Q04671	838 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	BTK	Q06187	659 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	BST1	Q10588	318 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	TRAF3	Q13114	568 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF630	Q2M218	657 aa	Predicted RBP	8.19	□□□□□ -1.1
USP4-213	ENST00000488520	HKDC1	Q2TB90	917 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	DEPDC1	Q5TB30	811 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	OR4C11	Q6IEV9	310 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	RPUSD3	Q6P087	351 aa	Known RBP	8.19	□□□□□ -1.1
USP4-213	ENST00000488520	LETMD1	Q6P1Q0	360 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	CYP20A1	Q6UW02	462 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	BNC2	Q6ZN30	1099 aa	Predicted RBP	8.19	□□□□□ -1.1
USP4-213	ENST00000488520	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	8.19	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF808	Q8N4W9	903 aa	Predicted RBP	8.19	□□□□□ -1.1
USP4-213	ENST00000488520	ANKRD53	Q8N9V6	530 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	KCT2	Q8NC54	265 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	ZCCHC10	Q8TBK6	192 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	AGR3	Q8TD06	166 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	AGAP11	Q8TF27	550 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	NACC2	Q96BF6	587 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	MVB12A	Q96EY5	273 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	MAGEB18	Q96M61	343 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	KCNC2	Q96PR1	638 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	F2RL3	Q96RI0	385 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	LMF1	Q96S06	567 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	MACROD1	Q9BQ69	325 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	TBCD	Q9BTW9	1192 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	CRB3	Q9BUF7	120 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	8.19	□□□□□ -1.1
USP4-213	ENST00000488520	SPNS1	Q9H2V7	528 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	WDR54	Q9H977	334 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	BRF2	Q9HAW0	419 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	CLK4	Q9HAZ1	481 aa	Known RBP	8.19	□□□□□ -1.1
USP4-213	ENST00000488520	CHST11	Q9NPF2	352 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	SEMA3G	Q9NS98	782 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	RIC8B	Q9NVN3	520 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	VPS29	Q9UBQ0	182 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	SLC12A4	Q9UP95	1085 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	RUVBL1	Q9Y265	456 aa	Known RBP	8.19	□□□□□ -1.1
USP4-213	ENST00000488520	TSC22D4	Q9Y3Q8	395 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	SLC22A7	Q9Y694	548 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	ARHGAP21	Q5T5U3	1957 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	MTOR	P42345	2549 aa		8.19	□□□□□ -1.1
USP4-213	ENST00000488520	SPG11	Q96JI7	2443 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520		A0A0A6YYC8	382 aa	Predicted RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	MAGEB17	A8MXT2	336 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520		H0YIG0	161 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	C19orf84	I3L1E1	186 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520		I3L1I5	382 aa	Predicted RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	UBFD1	O14562	309 aa	Known RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	ERI3	O43414	337 aa	Known RBP	8.18	□□□□□ -1.1

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms