RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ELP5Q8TE02 316 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 UBTD2Q8WUN7 234 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 SREK1Q8WXA9 508 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 UBE2E3Q969T4 207 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 ESAMQ96AP7 390 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 TAAR6Q96RI8 345 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 SERINC2Q96SA4 455 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 ATOH8Q96SQ7 321 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 SYT3Q9BQG1 590 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 LRRC1Q9BTT6 524 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 CD244Q9BZW8 370 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 ROGDIQ9GZN7 287 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 AICDAQ9GZX7 198 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 COPS7BQ9H9Q2 264 aaPredicted RBP6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 NECTIN3Q9NQS3 549 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 ZDHHC18Q9NUE0 388 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 ANKRD10Q9NXR5 420 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 MTRF1LQ9UGC7 380 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 MRPS33Q9Y291 106 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 ACOT9Q9Y305 439 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 DOPEY1Q5JWR5 2465 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 CROCCQ5TZA2 2017 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 CACNA1DQ01668 2161 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 A0A0G2JN53 185 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 A0A1B0GUH1 482 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 K7EPI3 171 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 UBXN8O00124 270 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 LRRTM2O43300 516 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 PRAMEF4O60810 478 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 MYO1DO94832 1006 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 MLYCDO95822 493 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 EPORP19235 508 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 CD22P20273 847 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 EEF1DP29692 281 aaKnown RBP6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 SERPINB1P30740 379 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 CASP2P42575 452 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 MSH2P43246 934 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 SERPINB8P50452 374 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 MTTPP55157 894 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 HSD17B7P56937 341 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 KCNK10P57789 538 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 OC90Q02509 493 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 RBPJQ06330 500 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 DLG1Q12959 904 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 SLC13A2Q13183 592 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 CHIT1Q13231 466 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 BMPR2Q13873 1038 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 RUNX2Q13950 521 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 E2F2Q14209 437 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 RCN2Q14257 317 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 ICAM4Q14773 271 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 ACAP2Q15057 778 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 TERF2Q15554 542 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 UAP1Q16222 522 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 FAM83EQ2M2I3 478 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 ADPRMQ3LIE5 342 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 ANKRD39Q53RE8 183 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 MROH9Q5TGP6 573 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 PRAMEF9Q5VWM5 478 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 MED27Q6P2C8 311 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 KLC3Q6P597 504 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 ABHD17CQ6PCB6 329 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 GFRALQ6UXV0 394 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 RPS19BP1Q86WX3 136 aaKnown RBP6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF595Q8IYB9 648 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 KIF2BQ8N4N8 673 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 FAM47BQ8NA70 645 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 TMEM178AQ8NBL3 297 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 FAM98AQ8NCA5 519 aaKnown RBP6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 NFAM1Q8NET5 270 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 RHEBL1Q8TAI7 183 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 KCTD4Q8WVF5 259 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 NXNL1Q96CM4 212 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 SCMH1Q96GD3 660 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 QRFPRQ96P65 431 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 SIGLEC12Q96PQ1 595 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 NPAS2Q99743 824 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 TSPYL1Q9H0U9 437 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 CDCP1Q9H5V8 836 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 LYRM4Q9HD34 91 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 KLHL1Q9NR64 748 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 PRTFDC1Q9NRG1 225 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 SNX15Q9NRS6 342 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 PNO1Q9NRX1 252 aaKnown RBP6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 LRFN1Q9P244 771 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 OPTCQ9UBM4 332 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 SEC14L3Q9UDX4 400 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF490Q9ULM2 529 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 ASB1Q9Y576 335 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 EML6Q6ZMW3 1958 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 UNC79Q9P2D8 2635 aa6.34□□□□□ -1.39
CCDC88A-213ENST00000476903 MAST4O15021 2626 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 A0A096LPK6 155 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 TRBV11-1A0A0K0K1C0 115 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 A8MUA0 341 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 FZD7O75084 574 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 SLC25A12O75746 678 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 NEURL1O76050 574 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 UNC5CO95185 931 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 KLHL2O95198 593 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms