RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 MTG1Q9BT17 334 aaPredicted RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 NDUFAF3Q9BU61 184 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 NLNQ9BYT8 704 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 SLC29A3Q9BZD2 475 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 FAM124BQ9H5Z6 455 aaPredicted RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 DHX33Q9H6R0 707 aaKnown RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 PELI2Q9HAT8 420 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ELOVL3Q9HB03 270 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 C3orf14Q9HBI5 128 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 TCF7L2Q9NQB0 619 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 AGPAT5Q9NUQ2 364 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 TMEM30AQ9NV96 361 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 OCIAD1Q9NX40 245 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 POLKQ9UBT6 870 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CRLS1Q9UJA2 301 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 VDAC3Q9Y277 283 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CHTOPQ9Y3Y2 248 aaKnown RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 RIPK3Q9Y572 518 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 SLCO1B1Q9Y6L6 691 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 EIF4G3O43432 1585 aaKnown RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 ZMYM6O95789 1325 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 A0A0U1RQS6 177 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 C5orf60A6NFR6 353 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 DNALI1O14645 258 aaPredicted RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 KLF11O14901 512 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 CFLARO15519 480 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 MLNRO43193 412 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 SMAD6O43541 496 aaKnown RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 LCMT2O60294 686 aaKnown RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 EML2O95834 649 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 STAG3L3P0CL85 134 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 DBTP11182 482 aaKnown RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 FCGR1AP12314 374 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 ZNF23P17027 643 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 MSH3P20585 1137 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 GPX3P22352 226 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 PSMA2P25787 234 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 CYLC1P35663 651 aaPredicted RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 MATKP42679 507 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 FNTAP49354 379 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 ETV1P50549 477 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 PPT1P50897 306 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 RPS8P62241 208 aaKnown RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 RPL23AP62750 156 aaKnown RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 MRPS21P82921 87 aaKnown RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 RELQ04864 619 aaPredicted RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 HSPA14Q0VDF9 509 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 GPR50Q13585 617 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 HKDC1Q2TB90 917 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 ZNF528Q3MIS6 628 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 DCAF4L1Q3SXM0 396 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 BCL7AQ4VC05 210 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 DDI2Q5TDH0 399 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 PRAMEF5Q5TYX0 476 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 PRAMEF6Q5VXH4 476 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 TMEM225Q6GV28 225 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 SLC39A4Q6P5W5 647 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 ZNF549Q6P9A3 640 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 CLEC2AQ6UVW9 174 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 GFRALQ6UXV0 394 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 ZNF841Q6ZN19 808 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 RFPL4BQ6ZWI9 263 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 ASRGL1Q7L266 308 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 TRMT11Q7Z4G4 463 aaKnown RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 TMCO2Q7Z6W1 182 aaPredicted RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 VPS36Q86VN1 386 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 SLC22A16Q86VW1 577 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 TMEM219Q86XT9 240 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 CCDC36Q8IYA8 594 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 ZNF683Q8IZ20 524 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 MUC20Q8N307 709 aaPredicted RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 ANKFN1Q8N957 763 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 SMRP1Q8NCR6 262 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 OR9K2Q8NGE7 335 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 GRHL3Q8TE85 626 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 PEX13Q92968 403 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 SLC35C1Q96A29 364 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 NXPE2Q96DL1 559 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 SENP5Q96HI0 755 aaPredicted RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 C4orf45Q96LM5 186 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 CDCA3Q99618 268 aaPredicted RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 BCL7BQ9BQE9 202 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 SLC39A3Q9BRY0 314 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 NUP58Q9BVL2 599 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 RBM24Q9BX46 236 aaKnown RBP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 LAT2Q9GZY6 243 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 EXO5Q9H790 373 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 VIPAS39Q9H9C1 493 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 GDF3Q9NR23 364 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 C1orf123Q9NWV4 160 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 MIOXQ9UGB7 285 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 SUN2Q9UH99 717 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 CDH9Q9ULB4 789 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 NIP7Q9Y221 180 aaKnown RBP eCLIP3.77□□□□□ -1.81
VPS13D-207ENST00000476169 LRP12Q9Y561 859 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 FKBP7Q9Y680 259 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 SYNJ2O15056 1496 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 ARAP1Q96P48 1450 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 FHAD1B1AJZ9 1412 aa3.77□□□□□ -1.81
VPS13D-207ENST00000476169 NUP160Q12769 1436 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms