RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CCRL2O00421 344 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 E2F3O00716 465 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 FOSL2P15408 326 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 NTSR1P30989 418 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 LRRC69Q6ZNQ3 347 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 OR5J2Q8NH18 312 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 DAZLQ92904 295 aaKnown RBP16.42■□□□□ 0.22
PTPRF-209ENST00000438120 EPHA6Q9UF33 1036 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 KCNS2Q9ULS6 477 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 CIB4A0PJX0 185 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 ADRB3P13945 408 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 HHEXQ03014 270 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 SLC17A9Q9BYT1 436 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF226Q9NYT6 803 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 DUSP3P51452 185 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-209ENST00000438120 SRYQ05066 204 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 PSD4Q8NDX1 1056 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 HCFC1R1Q9NWW0 138 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 TEX13CA0A0J9YWL9 993 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 SCAMP2O15127 329 aaKnown RBP16.41■□□□□ 0.22
PTPRF-209ENST00000438120 EEDO75530 441 aaKnown RBP16.41■□□□□ 0.22
PTPRF-209ENST00000438120 PORP16435 677 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-209ENST00000438120 PYCR1P32322 319 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 HSD17B12Q53GQ0 312 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 CLLU1OSQ5K130 101 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 KIAA0319Q5VV43 1072 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 MEDAGQ5VYS4 303 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 SLC25A25Q6KCM7 469 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF551Q7Z340 670 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-209ENST00000438120 VTCN1Q7Z7D3 282 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 OR56A3Q8NH54 315 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 CPNE2Q96FN4 548 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-209ENST00000438120 ENY2Q9NPA8 101 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 TUBA8Q9NY65 449 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-209ENST00000438120 NUFIP1Q9UHK0 495 aaKnown RBP16.41■□□□□ 0.22
PTPRF-209ENST00000438120 CPNE6O95741 557 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 TUBA3CQ13748 450 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 CDK10Q15131 360 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 C22orf42Q6IC83 251 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 LSM14AQ8ND56 463 aaKnown RBP16.41■□□□□ 0.22
PTPRF-209ENST00000438120 DKK3Q9UBP4 350 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 DHDHQ9UQ10 334 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 DNAJC15Q9Y5T4 150 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 EEF1E1O43324 174 aaKnown RBP16.41■□□□□ 0.22
PTPRF-209ENST00000438120 OTX2P32243 289 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 HMGCLP35914 325 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 BMPR1AP36894 532 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 HTR6P50406 440 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF84P51523 738 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 GRIK2Q13002 908 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 GLT8D1Q68CQ7 371 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 KLBQ86Z14 1044 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 KLHDC8AQ8IYD2 350 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 MINDY2Q8NBR6 621 aa16.41■□□□□ 0.22
PTPRF-209ENST00000438120 LRRN3E7EW58 273 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 IFNA7P01567 189 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 GTF2F2P13984 249 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 EPCAMP16422 314 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 CEACAM7Q14002 265 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 ZDHHC1Q8WTX9 485 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 FCAMRQ8WWV6 532 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 PPP1R14BQ96C90 147 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 RDH12Q96NR8 316 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 SAMD11Q96NU1 681 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 LRRN3Q9H3W5 708 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 OR5K4A6NMS3 321 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 MAGEA8P43361 318 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 FNTBP49356 437 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF252P-AS1Q0IIN9 211 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 TCEAL1Q15170 157 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.4■□□□□ 0.224e-6■■■■■ 36.3
PTPRF-209ENST00000438120 ISOC1Q96CN7 298 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-209ENST00000438120 CA3P07451 260 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 STSP08842 583 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 HTR1EP28566 365 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 GNRHRP30968 328 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 PXNP49023 591 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-209ENST00000438120 ECH1Q13011 328 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 FADDQ13158 208 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 NSDHLQ15738 373 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 C15orf39Q6ZRI6 1047 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 SEC14L4Q9UDX3 406 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 E7ESA3 106 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 THEGLP0DJG4 465 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 MAB21L1Q13394 359 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 SHFQ7M4L6 423 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 TMEM151AQ8N4L1 468 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 PROKR1Q8TCW9 393 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 FAM46AQ96IP4 442 aaKnown RBP16.4■□□□□ 0.22
PTPRF-209ENST00000438120 GLS2Q9UI32 602 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 SCP2D1Q9UJQ7 156 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 SPO11Q9Y5K1 396 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 BACE2Q9Y5Z0 518 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 MYH2Q9UKX2 1941 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 YES1P07947 543 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 SPATS1Q496A3 300 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF789Q5FWF6 425 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 RPS26P11Q5JNZ5 115 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-209ENST00000438120 NIPAL1Q6NVV3 410 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms