RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 JUNBP17275 347 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 IMPA1P29218 277 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 KCNC1P48547 511 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 SLC35F3Q8IY50 421 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 GPR156Q8NFN8 814 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 OR52E4Q8NGH9 312 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 OVCA2Q8WZ82 227 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 GPR21Q99679 349 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 CMKLR1Q99788 373 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 NDRG3Q9UGV2 375 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 RAI2Q9Y5P3 530 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PIK3C2BO00750 1634 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 NPEPPSL1A6NEC2 478 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 ZNF878C9JN71 531 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 STMND1H3BQB6 276 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 ARP10275 920 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 UBL4AP11441 157 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 CDK4P11802 303 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 GPR149Q86SP6 731 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 ZC3H3Q8IXZ2 948 aaKnown RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 PROKR1Q8TCW9 393 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 PTGES2Q9H7Z7 377 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 CD300AQ9UGN4 299 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 MAP4K5Q9Y4K4 846 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 A0A0G2JN53 185 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 F6UZH7 168 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 MBP02144 154 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 EDNRAP25101 427 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 SNCAP37840 140 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 PLA2G16P53816 162 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 SELENOVP59797 346 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 ZNF616Q08AN1 781 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 RAB35Q15286 201 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 STEAP4Q687X5 459 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 FIGNL1Q6PIW4 674 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 ATG4CQ96DT6 458 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 C1orf74Q96LT6 269 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 QRSL1Q9H0R6 528 aaKnown RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 IL26Q9NPH9 171 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 CPQQ9Y646 472 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 KPTNQ9Y664 436 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 CACNG2Q9Y698 323 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 FTCDNL1E5RQL4 147 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 ALX3O95076 343 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 CKMT2P17540 419 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 MEF2AQ02078 507 aaPredicted RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 MXD1Q05195 221 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 PUS10Q3MIT2 529 aaKnown RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 DCST2Q5T1A1 773 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 XKR5Q6UX68 686 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 WDR18Q9BV38 432 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 TSPAN10Q9H1Z9 355 aaPredicted RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 CHRNA9Q9UGM1 479 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 AKAP12Q02952 1782 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 MEIOCA2RUB1 952 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 M0QZK8 103 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 GGCTO75223 188 aaKnown RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 TMEM63AO94886 807 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 TFPIP10646 304 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 CD1EP15812 388 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 SPI1P17947 270 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 GABRA5P31644 462 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 ICAM3P32942 547 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 STC1P52823 247 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 COTL1Q14019 142 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 SLC2A12Q8TD20 617 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 GPATCH2LQ9NWQ4 482 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 TGFB1I1O43294 461 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 LPLP06858 475 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 ITPKBP27987 946 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 ADGRF1Q5T601 910 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 UBAP2Q5T6F2 1119 aaKnown RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 OR1M1Q8NGA1 313 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 OR51L1Q8NGJ5 315 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 FNDC9Q8TBE3 224 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 FDXACB1Q9BRP7 624 aaPredicted RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 MFFQ9GZY8 342 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 PRKAB1Q9Y478 270 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 SNHG28P0DPA3 235 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 PAFAH1B3Q15102 231 aaKnown RBP6.9□□□□□ -1.3
VPS53-204ENST00000437048 GPR162Q16538 588 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 INAVAQ3KP66 663 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 STK35Q8TDR2 534 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 SLC25A32Q9H2D1 315 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 V9GYS6 101 aa6.9□□□□□ -1.3
VPS53-204ENST00000437048 SDC3O75056 442 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 F7P08709 466 aaPredicted RBP6.9□□□□□ -1.31
VPS53-204ENST00000437048 MCCD1P59942 119 aaPredicted RBP6.9□□□□□ -1.31
VPS53-204ENST00000437048 SLC39A12Q504Y0 691 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 MLIPQ5VWP3 458 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 FAM205BPQ63HN1 556 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 OR52E8Q6IFG1 317 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 SAPCD2Q86UD0 394 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 OR11A1Q9GZK7 315 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 FBXO8Q9NRD0 319 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 ATF5Q9Y2D1 282 aaPredicted RBP6.9□□□□□ -1.31
VPS53-204ENST00000437048 SLC6A5Q9Y345 797 aa6.9□□□□□ -1.31
VPS53-204ENST00000437048 B4GALT5O43286 388 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms