RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TM4SF18Q96CE8 201 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 ABHD8Q96I13 439 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 NLNQ9BYT8 704 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 DPEP2Q9H4A9 486 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 SIAEQ9HAT2 523 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 LHX9Q9NQ69 397 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 IMPAD1Q9NX62 359 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 RPS6KA6Q9UK32 745 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 BLOC1S6Q9UL45 172 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 CARD8Q9Y2G2 431 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 MRPS2Q9Y399 296 aaKnown RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 GVINP1Q7Z2Y8 2422 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 LOC105369274A0A096LPK9 316 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 LOC102723532A0A0G2JNH3 316 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 C1orf226A1L170 272 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 CPSF4LA6NMK7 179 aaKnown RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 TBX1O43435 398 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 SERPINB7O75635 380 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 CPNE6O95741 557 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 JUNBP17275 347 aaPredicted RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 CD6P30203 668 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 IGFALSP35858 605 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 CCT3P49368 545 aaKnown RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 MAN2A2P49641 1150 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 ERVK-21P61565 698 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 TOP3AQ13472 1001 aaPredicted RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 FAM214AQ32MH5 1076 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 TMEM92Q6UXU6 159 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 NCCRP1Q6ZVX7 275 aaPredicted RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 SPATC1Q76KD6 591 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 UBE3DQ7Z6J8 389 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 ENTHD1Q8IYW4 607 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 OR4N4Q8N0Y3 316 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 LCN9Q8WX39 176 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 OR1E3Q8WZA6 343 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 RORBQ92753 470 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 NRBF2Q96F24 287 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 SIPA1Q96FS4 1042 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 C7orf34Q96L11 122 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 CAMK1GQ96NX5 476 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 ZCCHC2Q9C0B9 1178 aaKnown RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 SERHL2Q9H4I8 314 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 CNIH4Q9P003 139 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 CLEC2DQ9UHP7 191 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 DUSP12Q9UNI6 340 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 RNF6Q9Y252 685 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 CENPVL1A0A0U1RR11 272 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 A0A1W2PPV9 198 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 FFAR1O14842 300 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 PI15O43692 258 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 NDUFS2O75306 463 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 GADD45GO95257 159 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 RB1P06400 928 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 CEACAM5P06731 702 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 PORP16435 677 aaPredicted RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 RYKP34925 604 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 GRK5P34947 590 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 MC3RP41968 323 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 NR4A2P43354 598 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 TARDBPQ13148 414 aaKnown RBP eCLIP7.92□□□□□ -1.14
CD44-208ENST00000428726 IL18R1Q13478 541 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 SPIN4Q56A73 249 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 ZC3H12BQ5HYM0 836 aaKnown RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 TJAP1Q5JTD0 557 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 COLEC12Q5KU26 742 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 ATAT1Q5SQI0 421 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 CBLL1Q75N03 491 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 SLC22A16Q86VW1 577 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 NLRP8Q86W28 1048 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 VRK2Q86Y07 508 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 CROCCP3Q8IVE0 287 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 CADM3Q8N126 398 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 FBXO15Q8NCQ5 510 aaPredicted RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 HERVK_113Q902F9 699 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 REPS1Q96D71 796 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 C11orf24Q96F05 449 aaPredicted RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 SH3YL1Q96HL8 342 aaPredicted RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 Q96MT0 163 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 OR5M11Q96RB7 305 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 DOK1Q99704 481 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 DOHHQ9BU89 302 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 OR51E2Q9H255 320 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 OR51I1Q9H343 314 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 TRIT1Q9H3H1 467 aaKnown RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 MRPS30Q9NP92 439 aaKnown RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 ADAP2Q9NPF8 381 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 MS4A12Q9NXJ0 267 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 SEC14L3Q9UDX4 400 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 LYVE1Q9Y5Y7 322 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 TTC28Q96AY4 2481 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 A0A1W2PR48 441 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 HOXC11O43248 304 aaPredicted RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 WBP4O75554 376 aaKnown RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 HMGN2P05204 90 aaKnown RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 GKN3PP0CG01 181 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 LAMP2P13473 410 aa7.92□□□□□ -1.14
CD44-208ENST00000428726 PPIBP23284 216 aaKnown RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 DNAJA1P31689 397 aaKnown RBP7.92□□□□□ -1.14
CD44-208ENST00000428726 CNR2P34972 360 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms