RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ETV5P41161 510 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 MAGEA2P43356 314 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 GSTM5P46439 218 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 SLC6A12P48065 614 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 ETV1P50549 477 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 CTBP2P56545 445 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 SRSF5Q13243 272 aaKnown RBP8.22□□□□□ -1.09
USP40-203ENST00000427112 KRT33BQ14525 404 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 GPR33Q49SQ1 333 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 SMUG1Q53HV7 270 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 Q5BKY6 102 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 CRB2Q5IJ48 1285 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 TMEM31Q5JXX7 168 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 FAM83HQ6ZRV2 1179 aaPredicted RBP8.22□□□□□ -1.09
USP40-203ENST00000427112 PLA2G15Q8NCC3 412 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 ENKURQ8TC29 256 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 SLC7A13Q8TCU3 470 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 CHAC2Q8WUX2 184 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 TESCQ96BS2 214 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 REPS1Q96D71 796 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 OPALINQ96PE5 141 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 CCDC86Q9H6F5 360 aaKnown RBP8.22□□□□□ -1.09
USP40-203ENST00000427112 REEP4Q9H6H4 257 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 HHATLQ9HCP6 504 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 FBXO8Q9NRD0 319 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 KCNK6Q9Y257 313 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.21□□□□□ -1.09
USP40-203ENST00000427112 MEIOCA2RUB1 952 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 ANKRD34BA5PLL1 514 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 OR52A4PA6NMU1 304 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 HIDE1A8MVS5 230 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 CA12O43570 354 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 PCDH8O95206 1070 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 CXCL14O95715 111 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 GYPBP06028 91 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 IL7P13232 177 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 NPPBP16860 134 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 CD9P21926 228 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 ZNF91Q05481 1191 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 ZNF763Q0D2J5 394 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 STK11Q15831 433 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 CEP78Q5JTW2 689 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 SLC8B1Q6J4K2 584 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 HSDL2Q6YN16 418 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 RRM2BQ7LG56 351 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 C16orf62Q7Z3J2 963 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 PDZD3Q86UT5 571 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 RAB43Q86YS6 212 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 IZUMO1Q8IYV9 350 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 BBS1Q8NFJ9 593 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 WDR20Q8TBZ3 569 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 GCDHQ92947 438 aaPredicted RBP8.21□□□□□ -1.09
USP40-203ENST00000427112 NKX3-1Q99801 234 aaPredicted RBP8.21□□□□□ -1.09
USP40-203ENST00000427112 ZCCHC3Q9NUD5 404 aaKnown RBP8.21□□□□□ -1.09
USP40-203ENST00000427112 FAM120CQ9NX05 1096 aaKnown RBP8.21□□□□□ -1.09
USP40-203ENST00000427112 B3GNT3Q9Y2A9 372 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 PEX14O75381 377 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 POP4O95707 220 aaKnown RBP8.21□□□□□ -1.09
USP40-203ENST00000427112 EPHX1P07099 455 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 POLR2EP19388 210 aaKnown RBP8.21□□□□□ -1.09
USP40-203ENST00000427112 PSMA1P25786 263 aaKnown RBP8.21□□□□□ -1.09
USP40-203ENST00000427112 OLR1P78380 273 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 FAHD1Q6P587 224 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 UNC5DQ6UXZ4 953 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 ESPNLQ6ZVH7 1005 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 PHC2Q8IXK0 858 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 FRMD1Q8N878 549 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 IL17RDQ8NFM7 739 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 VN1R2Q8NFZ6 395 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 OR52P1PQ8NH57 321 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 FAM46AQ96IP4 442 aaKnown RBP8.21□□□□□ -1.09
USP40-203ENST00000427112 PIP5K1AQ99755 562 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 GAL3ST1Q99999 423 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 ZSCAN5AQ9BUG6 496 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 MKRN2Q9H000 416 aaKnown RBP8.21□□□□□ -1.09
USP40-203ENST00000427112 IL21Q9HBE4 155 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 FZD3Q9NPG1 666 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 TDP1Q9NUW8 608 aa8.21□□□□□ -1.09
USP40-203ENST00000427112 CCDC182A6NF36 153 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 ATG13O75143 517 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 CSTF2P33240 577 aaKnown RBP eCLIP8.21□□□□□ -1.1
USP40-203ENST00000427112 ELAVL2Q12926 359 aaKnown RBP8.21□□□□□ -1.1
USP40-203ENST00000427112 CCNJQ5T5M9 372 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 TRIM40Q6P9F5 258 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 C6orf120Q7Z4R8 191 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 MCCC1Q96RQ3 725 aaPredicted RBP8.21□□□□□ -1.1
USP40-203ENST00000427112 FNDC11Q9BVV2 318 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 ZNF717Q9BY31 904 aaPredicted RBP8.21□□□□□ -1.1
USP40-203ENST00000427112 MRPL9Q9BYD2 267 aaKnown RBP8.21□□□□□ -1.1
USP40-203ENST00000427112 RNF208Q9H0X6 261 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 C6orf106Q9H6K1 298 aaPredicted RBP8.21□□□□□ -1.1
USP40-203ENST00000427112 HMX1Q9NP08 348 aaPredicted RBP8.21□□□□□ -1.1
USP40-203ENST00000427112 TAAR2Q9P1P5 351 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 SLC23A2Q9UGH3 650 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 MKLN1Q9UL63 735 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 TRPM7Q96QT4 1865 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 CABIN1Q9Y6J0 2220 aa8.21□□□□□ -1.1
USP40-203ENST00000427112 FAM186AA6NE01 2351 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 TRIM64BA6NI03 449 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 FAM47E-STBD1D6RA91 191 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms