RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 GALNT7Q86SF2 657 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PIM3Q86V86 326 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PIANPQ8IYJ0 282 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CFAP206Q8IYR0 622 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PDIK1LQ8N165 341 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 MNS1Q8NEH6 495 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 OR10G6Q8NH81 332 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 KIF18AQ8NI77 898 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 GABPB2Q8TAK5 448 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 HM13Q8TCT9 377 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 SLC37A2Q8TED4 501 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ST8SIA4Q92187 359 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 STAMBPL1Q96FJ0 436 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 SNF8Q96H20 258 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 SERPINB12Q96P63 405 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 GFM1Q96RP9 751 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 KRT12Q99456 494 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 EBNA1BP2Q99848 306 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CCDC3Q9BQI4 270 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 WDR83Q9BRX9 315 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ERP44Q9BS26 406 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TMEM79Q9BSE2 394 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 FUZQ9BT04 418 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TSSK1BQ9BXA7 367 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CTDSP1Q9GZU7 261 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 OSGEPL1Q9H4B0 414 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 THAP1Q9NVV9 213 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF624Q9P2J8 865 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TBC1D29Q9UFV1 150 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 KLK13Q9UKR3 277 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 HSF4Q9ULV5 492 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 DTX4Q9Y2E6 619 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PCYT1BQ9Y5K3 369 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 MAD1L1Q9Y6D9 718 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 IGHV1OR21-1A0A087WYE8 117 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ZCWPW2A0A1B0GU75 182 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 A0A1W2PQM1 296 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TRABD2BA6NFA1 517 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 OR51F1A6NGY5 319 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 LILRA5A6NI73 299 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CD8B2A6NJW9 211 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 FAM90A7PA6NKC0 464 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 FAM90A22PA8MWA6 464 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 FAM90A12PA8MX19 464 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 FAM90A23PA8MXZ1 464 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 H3BMM5 538 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 GOLGA8MH3BSY2 632 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PEX12O00623 359 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 EIF3HO15372 352 aaKnown RBP eCLIP2.38□□□□□ -2.038e-7■■■■□ 26.2
VPS13A-208ENST00000423463 GUCY1B2O75343 617 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 AVILO75366 819 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CSO75390 466 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 SEC31AO94979 1220 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CPNE6O95741 557 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 EML2O95834 649 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 RPLP0P05388 317 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CYP4B1P13584 511 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PGAM1P18669 254 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CD1CP29017 333 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ALDH4A1P30038 563 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CCKBRP32239 447 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ARCN1P48444 511 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 HTR6P50406 440 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 RPS6KA3P51812 740 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TERF1P54274 439 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ADARP55265 1226 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 OR1D5P58170 312 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CRADDP78560 199 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CAV1Q03135 178 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ZFP36L1Q07352 338 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 KRTAP1-1Q07627 177 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ILF2Q12905 390 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CALCOCO2Q13137 446 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 EIF3IQ13347 325 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TRA2AQ13595 282 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 FHL1Q13642 323 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 FRG1Q14331 258 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 NFE2L1Q14494 772 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 SEMA3AQ14563 771 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 RPE65Q16518 533 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF658BQ4V348 819 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 SPANXN3Q5MJ09 141 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 DUPD1Q68J44 220 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TMEM71Q6P5X7 295 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 KLHL35Q6PF15 583 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TMEM26Q6ZUK4 368 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 DET1Q7L5Y6 550 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 SFTPA2Q8IWL1 248 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 LSMEM2Q8N112 164 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 MMGT1Q8N4V1 131 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CLDN19Q8N6F1 224 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 Q8N9G6 341 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 SCAIQ8N9R8 606 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 WDR36Q8NI36 951 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PATE1Q8WXA2 126 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 INPP5DQ92835 1189 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TMEM159Q96B96 161 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CXorf40BQ96DE9 158 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 C16orf45Q96MC5 204 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PANX3Q96QZ0 392 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms