RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 SLC22A9Q8IVM8 553 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 SFTPA2Q8IWL1 248 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 LAX1Q8IWV1 398 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 ENGASEQ8NFI3 743 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 OR4C15Q8NGM1 316 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 PNPT1Q8TCS8 783 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 HAS2Q92819 552 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 C4orf36Q96KX1 117 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 PCDHB18PQ96TA0 734 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 NAP1L3Q99457 506 aaPredicted RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 LLPHQ9BRT6 129 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 FUNDC2Q9BWH2 189 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 WWTR1Q9GZV5 400 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 ZNF665Q9H7R5 613 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 MEAF6Q9HAF1 191 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 CLK4Q9HAZ1 481 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 HELZP42694 1942 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 ZNF292O60281 2723 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 NOTCH4Q99466 2003 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 FAM208BQ5VWN6 2430 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 MKI67P46013 3256 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 ADAMTS9Q9P2N4 1935 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 SDR42E2A6NKP2 422 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 OR2AG2A6NM03 316 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 CYSRT1A8MQ03 144 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 HSPA12AO43301 675 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 KCNJ13O60928 360 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 MTRF1O75570 445 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 C1QL1O75973 258 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 JTBO76095 146 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 BAG4O95429 457 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 TSPAN15O95858 294 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 SERPINA3P01011 423 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 CSN3P07498 182 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 LYNP07948 512 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 MMP3P08254 477 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 POLR2CP19387 275 aaPredicted RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 CDH3P22223 829 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 OR1D2P34982 312 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 PDX1P52945 283 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 HNRNPH2P55795 449 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 RPS18P62269 152 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 PNRC1Q12796 327 aaPredicted RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 EFEMP1Q12805 493 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 KEAP1Q14145 624 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 ELAVL3Q14576 367 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 Q4G0T1 1027 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 ABHD17BQ5VST6 288 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 IRAK1BP1Q5VVH5 260 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 CLEC6AQ6EIG7 209 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 KCTD18Q6PI47 426 aaPredicted RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 UQCC3Q6UW78 93 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 ASCL4Q6XD76 172 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 YRDCQ86U90 279 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 GBP7Q8N8V2 638 aaPredicted RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 NECAB1Q8N987 351 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 WIPF2Q8TF74 440 aaPredicted RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 TMED6Q8WW62 240 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 SMPDL3BQ92485 455 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 OTULINQ96BN8 352 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 FAM210AQ96ND0 272 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 TAAR6Q96RI8 345 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 ATG101Q9BSB4 218 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 FTHL17Q9BXU8 183 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 UBQLN3Q9H347 655 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 MFSD1Q9H3U5 465 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 EBF3Q9H4W6 596 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 MAP6D1Q9H9H5 199 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 CDH20Q9HBT6 801 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 SLC38A7Q9NVC3 462 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 SMPD4Q9NXE4 827 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 FAM186AA6NE01 2351 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 SHROOM3Q8TF72 1996 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 PIPSLA2A3N6 862 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 TMEM89A2RUT3 159 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 BTBD17A6NE02 478 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 PDLIM1O00151 329 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 PI15O43692 258 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 NUDT21O43809 227 aaKnown RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 LDB3O75112 727 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 TSC22D2O75157 780 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 E2F6O75461 281 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 RAD51DO75771 328 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 KDM4BO94953 1096 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 ALOX5P09917 674 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 CD59P13987 128 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 GALP22466 123 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 CFPP27918 469 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 OTX2P32243 289 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 NOVP48745 357 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 GABPB1Q06547 395 aaPredicted RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 GK2Q14410 553 aaPredicted RBP2.36□□□□□ -2.03
MCF2-204ENST00000414978 BCL2A1Q16548 175 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 AANATQ16613 207 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 UGCGQ16739 394 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 NADK2Q4G0N4 442 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 WASHC2DQ5SRD0 308 aa2.36□□□□□ -2.03
MCF2-204ENST00000414978 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.36□□□□□ -2.03
MCF2-204ENST00000414978 LIN9Q5TKA1 542 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms