RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 EFR3AQ14156 821 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 PUM1Q14671 1186 aaKnown RBP eCLIP11.41□□□□□ -0.58
PTPRF-205ENST00000414879 TLR1Q15399 786 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 ZNF789Q5FWF6 425 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 AFMIDQ63HM1 303 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 TUBA3EQ6PEY2 450 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 KCTD18Q6PI47 426 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-205ENST00000414879 ZNF534Q76KX8 674 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 DEFB119Q8N690 84 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 LRRC46Q96FV0 321 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 TRNT1Q96Q11 434 aaKnown RBP11.41□□□□□ -0.58
PTPRF-205ENST00000414879 TPSD1Q9BZJ3 242 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 FZD3Q9NPG1 666 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 GIMAP2Q9UG22 337 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 PHYHO14832 338 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 BRINP1O60477 761 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 SYNGR4O95473 234 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 MT-ND5P03915 603 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 ZNF20P17024 532 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 PCGF2P35227 344 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 ACVR1Q04771 509 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 DMPKQ09013 629 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 OR52E1Q8NGJ3 308 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 ACOT12Q8WYK0 555 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 ADAD1Q96M93 576 aaKnown RBP11.41□□□□□ -0.58
PTPRF-205ENST00000414879 PHF7Q9BWX1 381 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-205ENST00000414879 RHBDL2Q9NX52 303 aa11.41□□□□□ -0.58
PTPRF-205ENST00000414879 FARS2O95363 451 aaKnown RBP11.4□□□□□ -0.58
PTPRF-205ENST00000414879 MMP2P08253 660 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 POU2F2P09086 479 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 ZNF12P17014 697 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 MAP3K8P41279 467 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 CAPZA1P52907 286 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 CCINQ13939 588 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 PIGGQ5H8A4 983 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 LARP4Q71RC2 724 aaKnown RBP eCLIP11.4□□□□□ -0.58
PTPRF-205ENST00000414879 PJA1Q8NG27 643 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 OR8K5Q8NH50 307 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 CEP76Q8TAP6 659 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 CPNE7Q9UBL6 633 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 MAU2Q9Y6X3 613 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 FAM240BA0A1B0GVZ2 78 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 GGT5P36269 586 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 CDKN1CP49918 316 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-205ENST00000414879 SMAD4Q13485 552 aaKnown RBP11.4□□□□□ -0.58
PTPRF-205ENST00000414879 IL18Q14116 193 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 CTSL3PQ5NE16 218 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 ARHGAP11AQ6P4F7 1023 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 ERI1Q8IV48 349 aaKnown RBP11.4□□□□□ -0.58
PTPRF-205ENST00000414879 RAB8BQ92930 207 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 TTYH1Q9H313 450 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-205ENST00000414879 HCSTQ9UBK5 93 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 KLHL21Q9UJP4 597 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 SPATA2Q9UM82 520 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 SH3D21A4FU49 640 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 JRKO75564 520 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 CD36P16671 472 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 HOXC8P31273 242 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 MCCD1P59942 119 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-205ENST00000414879 CMPK2Q5EBM0 449 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 HAVCR1Q96D42 359 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 TCTN2Q96GX1 697 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 PPP4R1LQ9P1A2 415 aa11.4□□□□□ -0.58
PTPRF-205ENST00000414879 GPC6Q9Y625 555 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-205ENST00000414879 UNC119BA6NIH7 251 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 CPSF4LA6NMK7 179 aaKnown RBP11.39□□□□□ -0.59
PTPRF-205ENST00000414879 AURKAO14965 403 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 MUSKO15146 869 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 SSNA1O43805 119 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ZBTB11O95625 1053 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-205ENST00000414879 BMP2P12643 396 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 SLC15A1P46059 708 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 CASP9P55211 416 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 GABARAPL2P60520 117 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 DPTQ07507 201 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 RIPPLY1Q0D2K3 151 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 C5orf22Q49AR2 442 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 PTCRAQ6ISU1 281 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-205ENST00000414879 PGBD5Q8N414 524 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 UXS1Q8NBZ7 420 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 OR6N1Q8NGY5 312 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 FANK1Q8TC84 345 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 C11orf24Q96F05 449 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-205ENST00000414879 SORT1Q99523 831 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 GINS4Q9BRT9 223 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 PIGUQ9H490 435 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 NT5DC2Q9H857 520 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ENPP4Q9Y6X5 453 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ARFGEF1Q9Y6D6 1849 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 TTLL8A6PVC2 850 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 PEPDP12955 493 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 HSD11B1P28845 292 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 CBX5P45973 191 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 RPS3AP61247 264 aaKnown RBP11.39□□□□□ -0.59
PTPRF-205ENST00000414879 SMCO1Q147U7 214 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 NDUFA5Q16718 116 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF423Q2M1K9 1284 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ANKRD26P1Q6NSI1 321 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 UNQ6126/PRO20091Q6UXV3 157 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 TTLL10Q6ZVT0 673 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms