RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 ZNF267Q14586 743 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 NCF4Q15080 339 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 SLC5A12Q1EHB4 618 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 DEFB110Q30KQ9 67 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 FAM76BQ5HYJ3 339 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 EIF3MQ7L2H7 374 aaKnown RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 VN1R5Q7Z5H4 357 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 PPP1R3BQ86XI6 285 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 GALNT12Q8IXK2 581 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 MYDGFQ969H8 173 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 MOCOSQ96EN8 888 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 CNDP2Q96KP4 475 aaKnown RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 EBF1Q9UH73 591 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 FBXO4Q9UKT5 387 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 PLEKHM1Q9Y4G2 1056 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 A0A1W2PQF6 199 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 SCAMP2O15127 329 aaKnown RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 ADAMDEC1O15204 470 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 YY2O15391 372 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 ZNF821O75541 412 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 TIPRLO75663 272 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 OR7A10O76100 309 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 LINC00271P0C7V0 271 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 XRCC1P18887 633 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 ROR2Q01974 943 aaKnown RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 BLOC1S3Q6QNY0 202 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 TREML1Q86YW5 311 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 CLVS1Q8IUQ0 354 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 ARMC8Q8IUR7 673 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 C19orf18Q8NEA5 215 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 OR4K1Q8NGD4 311 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 OR8J3Q8NGG0 315 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 C17orf50Q8WW18 174 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 TANKQ92844 425 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 RIBC2Q9H4K1 309 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 SDR39U1Q9NRG7 319 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 DNAJB9Q9UBS3 223 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 LIPT1Q9Y234 373 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 CSNK1G3Q9Y6M4 447 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 RPLP0P05388 317 aaKnown RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 BMP7P18075 431 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 CD247P20963 164 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 GGT5P36269 586 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 CDK6Q00534 326 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 REEP5Q00765 189 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 GARNL3Q5VVW2 1013 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 TMEM207Q6UWW9 146 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 CEACAM20Q6UY09 585 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 UTP15Q8TED0 518 aaKnown RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 S100ZQ8WXG8 99 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 GPR78Q96P69 363 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 SPATA9Q9BWV2 254 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 TBL1XR1Q9BZK7 514 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 OR8D2Q9GZM6 311 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 CNOT6Q9ULM6 557 aaKnown RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 CLEC4AQ9UMR7 237 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 FARSAQ9Y285 508 aaKnown RBP8.11□□□□□ -1.11
SYNE1-211ENST00000413186 GMPPBQ9Y5P6 360 aa8.11□□□□□ -1.11
SYNE1-211ENST00000413186 LOC102724200A0A096LPH7 203 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 GLOD5A6NK44 160 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 AK1P00568 194 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 CSF2P04141 144 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 FABP3P05413 133 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 C8orf89P0DMQ9 161 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 PEX2P28328 305 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 SLC16A1P53985 500 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 OR4D2P58180 307 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 DYRK1AQ13627 763 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 DGUOKQ16854 277 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 LIN52Q52LA3 116 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 ARHGAP22Q7Z5H3 698 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 SFTPA1Q8IWL2 248 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 CCDC116Q8IYX3 515 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 TMEM156Q8N614 296 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 ZNF548Q8NEK5 533 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 SLC38A4Q969I6 547 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 APIPQ96GX9 242 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 LPAR4Q99677 370 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 MYNNQ9NPC7 610 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 TMEM9BQ9NQ34 198 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 SLC35C2Q9NQQ7 365 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 SDHAF3Q9NRP4 125 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 PNMA8CA0A1B0GUJ8 204 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 ZNF879B4DU55 563 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 PSMB5P28074 263 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 GSTT1P30711 240 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 CENPAP49450 140 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 NDUFAF5Q5TEU4 345 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 THAP5Q7Z6K1 395 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 OFCC1Q8IZS5 231 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 METTL27Q8N6F8 245 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 ACOT4Q8N9L9 421 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 ZSCAN1Q8NBB4 408 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 OR5L2Q8NGL0 311 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 EZH1Q92800 747 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 RNF31Q96EP0 1072 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 ZNF347Q96SE7 839 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 GRIP2Q9C0E4 1043 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 RSL24D1Q9UHA3 163 aaKnown RBP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 NUP50Q9UKX7 468 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms