RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PRPF19Q9UMS4 504 aaKnown RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 SATB2Q9UPW6 733 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 MAN2B2Q9Y2E5 1009 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 B3GALT1Q9Y5Z6 326 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 SCN3AQ9NY46 2000 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 CHD6Q8TD26 2715 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 CFAP73A6NFT4 308 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 MYO1GB0I1T2 1018 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 LDB3O75112 727 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 DNAJB6O75190 326 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 STK17BO94768 372 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 SLITRK5O94991 958 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 KRT75O95678 551 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 ALBP02768 609 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 GSNP06396 782 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 HEXBP07686 556 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 CPMP14384 443 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 TNNI3P19429 210 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 PGM1P36871 562 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 HNRNPFP52597 415 aaKnown RBP13.35□□□□□ -0.27
SKA1-202ENST00000398452 WNT3P56703 355 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 SNRPNP63162 240 aaKnown RBP13.35□□□□□ -0.27
SKA1-202ENST00000398452 PRR5P85299 388 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 ERV3-1Q14264 604 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 MLC1Q15049 377 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 C6orf15Q6UXA7 325 aaPredicted RBP13.35□□□□□ -0.27
SKA1-202ENST00000398452 OR4N5Q8IXE1 308 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 KDF1Q8NAX2 398 aaPredicted RBP13.35□□□□□ -0.27
SKA1-202ENST00000398452 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.35□□□□□ -0.27
SKA1-202ENST00000398452 METTL21AQ8WXB1 218 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 FKBP10Q96AY3 582 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 MOAP1Q96BY2 351 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 SLC7A6OSQ96CW6 309 aaPredicted RBP13.35□□□□□ -0.27
SKA1-202ENST00000398452 RNF31Q96EP0 1072 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 ECSITQ9BQ95 431 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 THTPAQ9BU02 230 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 SLC52A3Q9NQ40 469 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 MAP10Q9P2G4 905 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 CES1P1Q9UKY3 287 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 PADI2Q9Y2J8 665 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 PCDHGA3Q9Y5H0 932 aa13.35□□□□□ -0.27
SKA1-202ENST00000398452 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.35□□□□□ -0.27
SKA1-202ENST00000398452 ASPDHA6ND91 283 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 FGF17O60258 216 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 GMNNO75496 209 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 CIB2O75838 187 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 TNFSF15O95150 251 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 ZCCHC18P0CG32 403 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 CD1EP15812 388 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 UQCRC2P22695 453 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 ETV5P41161 510 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 ANXA11P50995 505 aaKnown RBP13.34□□□□□ -0.27
SKA1-202ENST00000398452 PCBP4P57723 403 aaKnown RBP13.34□□□□□ -0.27
SKA1-202ENST00000398452 GABREP78334 506 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 PHC1P78364 1004 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 ID2Q02363 134 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 CAPRIN1Q14444 709 aaKnown RBP13.34□□□□□ -0.27
SKA1-202ENST00000398452 LRIF1Q5T3J3 769 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 FAM180BQ6P0A1 224 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 QSOX2Q6ZRP7 698 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 OVCH1Q7RTY7 1134 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 PRSS58Q8IYP2 241 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 ESX1Q8N693 406 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 GALNT6Q8NCL4 622 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 OR8J3Q8NGG0 315 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 CNRIP1Q96F85 164 aaPredicted RBP13.34□□□□□ -0.27
SKA1-202ENST00000398452 AMDHD1Q96NU7 426 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 SLC35A5Q9BS91 424 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 INPP5KQ9BT40 448 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 ALOXE3Q9BYJ1 711 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 B3GNT4Q9C0J1 378 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 GLIPR2Q9H4G4 154 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 POLR1BQ9H9Y6 1135 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 PADI1Q9ULC6 663 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 MKL2Q9ULH7 1088 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 TMEM184BQ9Y519 407 aaPredicted RBP13.34□□□□□ -0.27
SKA1-202ENST00000398452 PCDHGA8Q9Y5G5 932 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 CFAP47Q6ZTR5 3102 aa13.34□□□□□ -0.27
SKA1-202ENST00000398452 KNTC1P50748 2209 aa13.33□□□□□ -0.27
SKA1-202ENST00000398452 RNF103-CHMP3A0A140T963 221 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 TMEM8BA6NDV4 472 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 GSC2O15499 205 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 DNAJA2O60884 412 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 SCN2BO60939 215 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 ZGLP1P0C6A0 271 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 SLC35E2P0CK97 266 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 RORAP35398 523 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 FRKP42685 505 aaPredicted RBP13.33□□□□□ -0.28
SKA1-202ENST00000398452 SLC7A2P52569 658 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 HBA1P69905 142 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 TP53BP2Q13625 1128 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 MAP7Q14244 749 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 CEBPEQ15744 281 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 VWA2Q5GFL6 755 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 SAMD4BQ5PRF9 694 aaKnown RBP13.33□□□□□ -0.28
SKA1-202ENST00000398452 ZNF551Q7Z340 670 aaPredicted RBP13.33□□□□□ -0.28
SKA1-202ENST00000398452 ZC3H7AQ8IWR0 971 aaKnown RBP13.33□□□□□ -0.28
SKA1-202ENST00000398452 ST13P4Q8IZP2 240 aaPredicted RBP13.33□□□□□ -0.28
SKA1-202ENST00000398452 KIF2BQ8N4N8 673 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 SLC38A9Q8NBW4 561 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms