RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 ATP6V1E2Q96A05 226 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 ART5Q96L15 291 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 PELOQ9BRX2 385 aaKnown RBP12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 DEFB127Q9H1M4 99 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 IL1RL2Q9HB29 575 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 PROK2Q9HC23 129 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TEX10Q9NXF1 929 aaPredicted RBP12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 NFU1Q9UMS0 254 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 ZNF407Q9C0G0 2248 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 G3V3Y1 287 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 C19orf84I3L1E1 186 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 KIF2AO00139 706 aaPredicted RBP12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 FBXO45P0C2W1 286 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 PTGER4P35408 488 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 HSD17B3P37058 310 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 HERVK_113P63132 956 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 ERVK-8P63133 956 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 FUT7Q11130 342 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 ZNF267Q14586 743 aaPredicted RBP12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 EBPQ15125 230 aaKnown RBP12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 NDUFAF5Q5TEU4 345 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 OR52E8Q6IFG1 317 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 LETMD1Q6P1Q0 360 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 CYP20A1Q6UW02 462 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 MILR1Q7Z6M3 343 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 CD163Q86VB7 1156 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 MCEMP1Q8IX19 187 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 DOK4Q8TEW6 326 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 RIT1Q92963 219 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 ERVK-6Q9BXR3 956 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 MRPL1Q9BYD6 325 aaKnown RBP12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 WWTR1Q9GZV5 400 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 EPB41L4BQ9H329 900 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 CXorf21Q9HAI6 301 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 SEMA4BQ9NPR2 832 aaPredicted RBP12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 FARSBQ9NSD9 589 aaKnown RBP12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 SACM1LQ9NTJ5 587 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TMEM216Q9P0N5 145 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 CES1P1Q9UKY3 287 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 ERVK-19Q9WJR5 959 aa12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 CHCHD2Q9Y6H1 151 aaPredicted RBP12.62□□□□□ -0.39
TNFRSF1A-202ENST00000366159 CREBBPQ92793 2442 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 OR6C76A6NM76 312 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 FAM166BA8MTA8 275 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 RIPK2O43353 540 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 DYRK3O43781 588 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 CDC40O60508 579 aaKnown RBP eCLIP12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 PDE9AO76083 593 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 PDYNP01213 254 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 KLK1P06870 262 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TPOP07202 933 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 CT62P0C5K7 136 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 S1PR1P21453 382 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 SOX18P35713 384 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 KIR3DL1P43629 444 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 CDH13P55290 713 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 GALNT1Q10472 559 aaPredicted RBP12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TBL3Q12788 808 aaKnown RBP12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 FAM219BQ5XKK7 198 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 SLC22A10Q63ZE4 541 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 GK5Q6ZS86 529 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TRMT10CQ7L0Y3 403 aaKnown RBP12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 LCA5Q86VQ0 697 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 SLC22A16Q86VW1 577 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 ZNF295-AS1Q8N0V1 137 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TMEM251Q8N6I4 163 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 ZNF615Q8N8J6 731 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 SLC22A8Q8TCC7 542 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 MZB1Q8WU39 189 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TP53INP1Q96A56 240 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 NTNG2Q96CW9 530 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 MTBPQ96DY7 904 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 SPACA9Q96E40 222 aaPredicted RBP12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TREX2Q9BQ50 279 aaPredicted RBP12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TRIM8Q9BZR9 551 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 WDR41Q9HAD4 459 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 BRF2Q9HAW0 419 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 PRM3Q9NNZ6 103 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TUBA8Q9NY65 449 aaPredicted RBP12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 FETUBQ9UGM5 382 aa12.61□□□□□ -0.39
TNFRSF1A-202ENST00000366159 CACNA1CQ13936 2221 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 IQANK1A0A1B0GTG1 560 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 EXOC1LA0A1B0GW35 172 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 ACOT7O00154 380 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 OTCP00480 354 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 P04436 131 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 FAM153BP0C7A2 387 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TSPAN8P19075 237 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 TNFRSF8P28908 595 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 PIGAP37287 484 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 MAGEA5P43359 124 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 DNASE1L1P49184 302 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 PLGLB1Q02325 96 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 IFT88Q13099 833 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 NTRK2Q16620 822 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 FAM153CQ494X1 144 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 UNC50Q53HI1 259 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 ZNF678Q5SXM1 525 aa12.6□□□□□ -0.39
TNFRSF1A-202ENST00000366159 LGSNQ5TDP6 509 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms