RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CTSAP10619 480 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 IL7P13232 177 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 UQCRC2P22695 453 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 SDC2P34741 201 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 MESP2Q0VG99 397 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 GINS1Q14691 196 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 BCL2A1Q16548 175 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 CRTC2Q53ET0 693 aaPredicted RBP11.52□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF805Q5CZA5 627 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 MLIPQ5VWP3 458 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 AMER3Q8N944 861 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.52□□□□□ -0.57
CLIP3-201ENST00000360535 TMEM38AQ9H6F2 299 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 PCYT1BQ9Y5K3 369 aaPredicted RBP11.52□□□□□ -0.57
CLIP3-201ENST00000360535 SERTM1A2A2V5 107 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 SLC35F4A4IF30 521 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 WASH3PC4AMC7 463 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 PITPNM1O00562 1244 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 PLPP1O14494 284 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 PDPK1O15530 556 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 S100A1P23297 94 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 RAB25P57735 213 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 HOXC5Q00444 222 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 FAM83HQ6ZRV2 1179 aaPredicted RBP11.51□□□□□ -0.57
CLIP3-201ENST00000360535 CAMKMTQ7Z624 323 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 LHFPL3Q86UP9 236 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 ARMC5Q96C12 935 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 FNDC11Q9BVV2 318 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 TEX10Q9NXF1 929 aaPredicted RBP11.51□□□□□ -0.57
CLIP3-201ENST00000360535 PRR23AA6NEV1 266 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 HEPACAM2A8MVW5 462 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 SCG5P05408 212 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 ETV5P41161 510 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 ETV1P50549 477 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF750Q32MQ0 723 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 ACSM5Q6NUN0 579 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 ADGRF3Q8IZF5 1079 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 OR6F1Q8NGZ6 308 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 LMLNQ96KR4 655 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 ART5Q96L15 291 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 TMEM246Q9BRR3 403 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 EGLN3Q9H6Z9 239 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 RANGRFQ9HD47 186 aaPredicted RBP11.51□□□□□ -0.57
CLIP3-201ENST00000360535 MYNNQ9NPC7 610 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 TDP1Q9NUW8 608 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 MAPRE3Q9UPY8 281 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 HEATR5BQ9P2D3 2071 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 MEIOCA2RUB1 952 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 SH3D21A4FU49 640 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 OR1F1O43749 312 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 CCT3P49368 545 aaKnown RBP11.51□□□□□ -0.57
CLIP3-201ENST00000360535 RNF144AP50876 292 aaPredicted RBP11.51□□□□□ -0.57
CLIP3-201ENST00000360535 PCBP3P57721 371 aaKnown RBP11.51□□□□□ -0.57
CLIP3-201ENST00000360535 PODNL1Q6PEZ8 512 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 PAMR1Q6UXH9 720 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 B3GLCTQ6Y288 498 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 COMTD1Q86VU5 262 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 TRIM69Q86WT6 500 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 MMAAQ8IVH4 418 aaKnown RBP11.51□□□□□ -0.57
CLIP3-201ENST00000360535 GALNT12Q8IXK2 581 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 TMCO6Q96DC7 493 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 OSGEPL1Q9H4B0 414 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 TBC1D17Q9HA65 648 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 RPL36Q9Y3U8 105 aaKnown RBP11.51□□□□□ -0.57
CLIP3-201ENST00000360535 CMAHPQ9Y471 501 aa11.51□□□□□ -0.57
CLIP3-201ENST00000360535 QSOX1O00391 747 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 MPZL2O60487 215 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 DPM1O60762 260 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 NCR1O76036 304 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 EPHX1P07099 455 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 CRYBB2P43320 205 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 RFX2P48378 723 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 ST8SIA6P61647 398 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF79Q15937 498 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 TCEAL5Q5H9L2 206 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 PLPP4Q5VZY2 271 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 VN1R5Q7Z5H4 357 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 TECPR1Q7Z6L1 1165 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 SLC9B2Q86UD5 537 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 C17orf64Q86WR6 236 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 UBQLNLQ8IYU4 475 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 GOT1L1Q8NHS2 421 aaPredicted RBP11.5□□□□□ -0.57
CLIP3-201ENST00000360535 KLK6Q92876 244 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 SLC6A18Q96N87 628 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 NELL2Q99435 816 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 TRMT61BQ9BVS5 477 aaKnown RBP11.5□□□□□ -0.57
CLIP3-201ENST00000360535 MND1Q9BWT6 205 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 ZCCHC3Q9NUD5 404 aaKnown RBP11.5□□□□□ -0.57
CLIP3-201ENST00000360535 CNOT2Q9NZN8 540 aaKnown RBP11.5□□□□□ -0.57
CLIP3-201ENST00000360535 REV1Q9UBZ9 1251 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 ENOPH1Q9UHY7 261 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 MOSPD1Q9UJG1 213 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 CCDC182A6NF36 153 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 B4GALT2O60909 372 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 FGF18O76093 207 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 EFEMP2O95967 443 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 INSL4Q14641 139 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 GPAT3Q53EU6 434 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 PGBD2Q6P3X8 592 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 PHC2Q8IXK0 858 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms