RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 PPP2R2DQ66LE6 453 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 TMEM107Q6UX40 140 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 DNAJC22Q8N4W6 341 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 IQCF1Q8N6M8 205 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 RHOXF1Q8NHV9 184 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 TSACCQ96A04 125 aaPredicted RBP9.8□□□□□ -0.84
LIMA1-201ENST00000341247 LGALS12Q96DT0 336 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 ZHX1-C8orf76Q96EF9 292 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 SH3YL1Q96HL8 342 aaPredicted RBP9.8□□□□□ -0.84
LIMA1-201ENST00000341247 SLC35G5Q96KT7 338 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 TREX2Q9BQ50 279 aaPredicted RBP9.8□□□□□ -0.84
LIMA1-201ENST00000341247 DNAJC27Q9NZQ0 273 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 ACSL5Q9ULC5 683 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 ICKQ9UPZ9 632 aa9.8□□□□□ -0.84
LIMA1-201ENST00000341247 OR2A25A4D2G3 310 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 DNAJB5O75953 348 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 DNTTP04053 509 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 OCM2P0CE71 109 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 OCMP0CE72 109 aaPredicted RBP9.79□□□□□ -0.84
LIMA1-201ENST00000341247 ARHGAP19Q14CB8 494 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 MED22Q15528 200 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 TOR1AIP1Q5JTV8 583 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 ENPP7Q6UWV6 458 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 SHISA5Q8N114 240 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 CENPSQ8N2Z9 138 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 SLC6A20Q9NP91 592 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 CCNB1IP1Q9NPC3 277 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 PSORS1C1Q9UIG5 152 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 TMCC3Q9ULS5 477 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 KCNE3Q9Y6H6 103 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 PMF1-BGLAPU3KQ54 211 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 ANKRD33BA6NCL7 494 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 SEMA3DO95025 777 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 MFN2O95140 757 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 ADRA2AP08913 450 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 ERGP11308 486 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 RHCEP18577 417 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 GRK3P35626 688 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 PCBP4P57723 403 aaKnown RBP9.79□□□□□ -0.84
LIMA1-201ENST00000341247 RPS3AP61247 264 aaKnown RBP9.79□□□□□ -0.84
LIMA1-201ENST00000341247 GPAT3Q53EU6 434 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 TMEM196Q5HYL7 178 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 ZNF776Q68DI1 518 aaPredicted RBP9.79□□□□□ -0.84
LIMA1-201ENST00000341247 TCTN3Q6NUS6 607 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 KAT2AQ92830 837 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 CHCHD6Q9BRQ6 235 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 MVB12BQ9H7P6 319 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 THSD1Q9NS62 852 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 DENND4AQ7Z401 1863 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 A0A1W2PR48 441 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 CLCA1A8K7I4 914 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 K7EQS6 105 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 BTN3A3O00478 584 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 AIREO43918 545 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 COL9A1P20849 921 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 GRK5P34947 590 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 TRIM23P36406 574 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 RPS21P63220 83 aaKnown RBP9.79□□□□□ -0.84
LIMA1-201ENST00000341247 HOXC5Q00444 222 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 DLX2Q07687 328 aaPredicted RBP9.79□□□□□ -0.84
LIMA1-201ENST00000341247 TARDBPQ13148 414 aaKnown RBP eCLIP9.79□□□□□ -0.84
LIMA1-201ENST00000341247 OR4N5Q8IXE1 308 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 KCT2Q8NC54 265 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 B3GNT7Q8NFL0 401 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 ZCCHC10Q8TBK6 192 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 CREB3L4Q8TEY5 395 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 AMDHD1Q96NU7 426 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 QRFPRQ96P65 431 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 ITPAQ9BY32 194 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 BTBD1Q9H0C5 482 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 PCBD2Q9H0N5 130 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 OR51E2Q9H255 320 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 RERGLQ9H628 205 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 NEUROD4Q9HD90 331 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 SLC35C2Q9NQQ7 365 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 POLE4Q9NR33 117 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 PCDHGB1Q9Y5G3 927 aa9.79□□□□□ -0.84
LIMA1-201ENST00000341247 TMEM247A6NEH6 219 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 BOLA2-SMG1P6H3BVE0 249 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 M0R082 166 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 APOL3O95236 402 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 ADH1BP00325 375 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 CHRM5P08912 532 aaPredicted RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 CKMT1AP12532 417 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 CDC42P60953 191 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 KCNC4Q03721 635 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 SLC9A5Q14940 896 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 COLEC12Q5KU26 742 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 DCST1Q5T197 706 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 NUDT18Q6ZVK8 323 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 CCDC80Q76M96 950 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 ACOT4Q8N9L9 421 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 ZNF675Q8TD23 568 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 IPCEF1Q8WWN9 437 aaPredicted RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 OR5M11Q96RB7 305 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 APOOQ9BUR5 198 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 C6orf62Q9GZU0 229 aaPredicted RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 TBC1D29Q9UFV1 150 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 CLDN25C9JDP6 229 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 SLC22A1O15245 554 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms