RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 GJD2Q9UKL4 321 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 GRXCR2A6NFK2 248 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 E7EQ34 232 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 APOC1P02654 83 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 CBLP22681 906 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 HSD11B1P28845 292 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 GABRA3P34903 492 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 SNTB2Q13425 540 aaKnown RBP13.14□□□□□ -0.31
RTN4-202ENST00000337526 CATSPEREQ5SY80 951 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 XKRXQ6PP77 449 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 SPARTQ8N0X7 666 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 DTX3Q8N9I9 347 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 RAB7BQ96AH8 199 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 HIST1H2AAQ96QV6 131 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 BCL7BQ9BQE9 202 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 SDHAF3Q9NRP4 125 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 SCP2D1Q9UJQ7 156 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 MAGED1Q9Y5V3 778 aaPredicted RBP13.14□□□□□ -0.31
RTN4-202ENST00000337526 TTC34A8MYJ7 566 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 ARHGEF15O94989 841 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 NDUFV2P19404 249 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 CD70P32970 193 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 GNG2P59768 71 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 RPA4Q13156 261 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 RGNQ15493 299 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 ABCA11PQ4W5N1 156 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 HSD17B12Q53GQ0 312 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 ZNF550Q7Z398 422 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 CNTN4Q8IWV2 1026 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 PMM1Q92871 262 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 NELL2Q99435 816 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 HPF1Q9NWY4 346 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 NUP50Q9UKX7 468 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 MAB21L2Q9Y586 359 aa13.14□□□□□ -0.31
RTN4-202ENST00000337526 TRIM64CA6NLI5 447 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 DRD2P14416 443 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 CPOXP36551 454 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 ACVR1BP36896 505 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 MRPL10Q7Z7H8 261 aaKnown RBP13.13□□□□□ -0.31
RTN4-202ENST00000337526 OR6N2Q8NGY6 317 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 GTPBP2Q9BX10 602 aaKnown RBP13.13□□□□□ -0.31
RTN4-202ENST00000337526 CPNE5Q9HCH3 593 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 ZNF878C9JN71 531 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 ARNTLO00327 626 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 SMAD9O15198 467 aaKnown RBP13.13□□□□□ -0.31
RTN4-202ENST00000337526 ANXA3P12429 323 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 MAN2A2P49641 1150 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 MAD2L1BPQ15013 274 aaPredicted RBP13.13□□□□□ -0.31
RTN4-202ENST00000337526 FAM189A2Q15884 450 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 PRRT3Q5FWE3 981 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 TMEM107Q6UX40 140 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 FOXRED2Q8IWF2 684 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 C3orf58Q8NDZ4 430 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 SETD6Q8TBK2 473 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 ECHDC3Q96DC8 303 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 ITPKCQ96DU7 683 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 SCGB3A2Q96PL1 93 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 ATOH8Q96SQ7 321 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 SH2B3Q9UQQ2 575 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 CCDC88AQ3V6T2 1871 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 TOPAZ1Q8N9V7 1692 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 C13orf42A0A1B0GVH6 325 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 FEZF1A0PJY2 475 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 CD8B2A6NJW9 211 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 CD8BP10966 210 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 CD40LGP29965 261 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 NAA10P41227 235 aaPredicted RBP13.13□□□□□ -0.31
RTN4-202ENST00000337526 EIF1AXP47813 144 aaKnown RBP13.13□□□□□ -0.31
RTN4-202ENST00000337526 SELENOWP63302 87 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 E2F1Q01094 437 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 VEZF1Q14119 521 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 ZNF534Q76KX8 674 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 AMIGO1Q86WK6 493 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 FAM217AQ8IXS0 508 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 C16orf78Q8WTQ4 265 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 THRSPQ92748 146 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 POLDIP3Q9BY77 421 aaKnown RBP13.13□□□□□ -0.31
RTN4-202ENST00000337526 OR2B2Q9GZK3 357 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 FARSAQ9Y285 508 aaKnown RBP13.13□□□□□ -0.31
RTN4-202ENST00000337526 A0A0G2JPF8 293 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 A0A1B0GVG6 124 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 HNRNPCL3B7ZW38 293 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 NPIPA5E9PKD4 350 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 RBBP9O75884 186 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 IFNA21P01568 189 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 HNRNPCL4P0DMR1 293 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 GP1BBP13224 206 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 SDC1P18827 310 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 ACTC1P68032 377 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 ACTA1P68133 377 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 PRKCDQ05655 676 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 GK3PQ14409 553 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 FAM180BQ6P0A1 224 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 BORAQ6PGQ7 559 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 FIBINQ8TAL6 211 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 FCAMRQ8WWV6 532 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 CCDC32Q9BV29 185 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 STOX2Q9P2F5 926 aaPredicted RBP13.13□□□□□ -0.31
RTN4-202ENST00000337526 NPIPA1Q9UND3 350 aa13.13□□□□□ -0.31
RTN4-202ENST00000337526 PCDHGA3Q9Y5H0 932 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms