RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 MBD1Q9UIS9 605 aaPredicted RBP13.06□□□□□ -0.32
SYNE3-201ENST00000334258 AP1M2Q9Y6Q5 423 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 TDRD15B5MCY1 1934 aaKnown RBP13.06□□□□□ -0.32
SYNE3-201ENST00000334258 SPEGQ15772 3267 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 SCN5AQ14524 2016 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 TRBV5-4A0A0C4DH59 114 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 TRIM77I1YAP6 450 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 COCHO43405 550 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 PROM1O43490 865 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 HCN1O60741 890 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 STC2O76061 302 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 CCL5P13501 91 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 AVPR1BP47901 424 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 RPS13P62277 151 aaKnown RBP13.06□□□□□ -0.32
SYNE3-201ENST00000334258 PCDH1Q08174 1060 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 RBBP4Q09028 425 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 LRRC73Q5JTD7 316 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 ANKRD54Q6NXT1 300 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 TPGS1Q6ZTW0 290 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 FBXL6Q8N531 539 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 OXR1Q8N573 874 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 TMEM145Q8NBT3 493 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 AKAP1Q92667 903 aaKnown RBP eCLIP13.06□□□□□ -0.32
SYNE3-201ENST00000334258 HHIPL1Q96JK4 782 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 PAK6Q9NQU5 681 aaPredicted RBP13.06□□□□□ -0.32
SYNE3-201ENST00000334258 GLTPQ9NZD2 209 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 CD84Q9UIB8 345 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 ZNF222Q9UK12 451 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 PTPRDP23468 1912 aa13.06□□□□□ -0.32
SYNE3-201ENST00000334258 A8MVJ9 347 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 RNASET2O00584 256 aaKnown RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 FABP7O15540 132 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 ADAP00813 363 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 ETV5P41161 510 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 CSKP41240 450 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 ETV1P50549 477 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 SNRPGP62308 76 aaKnown RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 TAGLNQ01995 201 aaKnown RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 C2orf80Q0P641 193 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 COL19A1Q14993 1142 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 ZNF630Q2M218 657 aaPredicted RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 FLYWCH1Q4VC44 716 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 RPS26P11Q5JNZ5 115 aaPredicted RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 LAMTOR1Q6IAA8 161 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 KIAA1841Q6NSI8 718 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 FAM122CQ6P4D5 195 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 ASB18Q6ZVZ8 466 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 OTOP2Q7RTS6 562 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 KCTD20Q7Z5Y7 419 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 CDH24Q86UP0 819 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 FAM181AQ8N9Y4 354 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 HUS1BQ8NHY5 278 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 PCNPQ8WW12 178 aaKnown RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 LRR1Q96L50 414 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 BRD9Q9H8M2 597 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 HCN2Q9UL51 889 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 TSPAN4O14817 238 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 LGI1O95970 557 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 OR1D2P34982 312 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 HMGA2P52926 109 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 MVDP53602 400 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 RPS26P62854 115 aaKnown RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 PPP3R1P63098 170 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 IER5LQ5T953 404 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 TNFAIP8L2Q6P589 184 aaPredicted RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 PXYLP1Q8TE99 480 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 IER2Q9BTL4 223 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 TBC1D17Q9HA65 648 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 C1GALT1Q9NS00 363 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 SPATA6Q9NWH7 488 aaPredicted RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 ING4Q9UNL4 249 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 NPIPB15A6NHN6 443 aaPredicted RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 TRIM3O75382 744 aaPredicted RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 NCR1O76036 304 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 PDGFAP04085 211 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 ITGB8P26012 769 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 AP2S1P53680 142 aaPredicted RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 RAE1P78406 368 aaKnown RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 LRRC32Q14392 662 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 ZNF267Q14586 743 aaPredicted RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 ZNF730Q6ZMV8 503 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 CHST9Q7L1S5 443 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 LIX1LQ8IVB5 337 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 LRRC17Q8N6Y2 441 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 SLAIN1Q8ND83 568 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 WDR20Q8TBZ3 569 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 ZNF431Q8TF32 576 aaPredicted RBP13.05□□□□□ -0.32
SYNE3-201ENST00000334258 TM9SF4Q92544 642 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 WBP2Q969T9 261 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 GIMAP5Q96F15 307 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 REEP4Q9H6H4 257 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 B3GNT2Q9NY97 397 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 GULP1Q9UBP9 304 aa13.05□□□□□ -0.32
SYNE3-201ENST00000334258 OR6C75A6NL08 312 aa13.04□□□□□ -0.32
SYNE3-201ENST00000334258 ZNF197O14709 1029 aa13.04□□□□□ -0.32
SYNE3-201ENST00000334258 ZNF254O75437 659 aa13.04□□□□□ -0.32
SYNE3-201ENST00000334258 RAB36O95755 333 aa13.04□□□□□ -0.32
SYNE3-201ENST00000334258 TP53P04637 393 aaPredicted RBP13.04□□□□□ -0.32
SYNE3-201ENST00000334258 TIA1P31483 386 aaKnown RBP eCLIP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms