RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 TRHRP34981 398 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-201ENST00000332345 CYB561P49447 251 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 HLCSP50747 726 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 SLC18A1P54219 525 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 MAGOHP61326 146 aaKnown RBP13.03□□□□□ -0.32
LIMS1-201ENST00000332345 RNF4P78317 190 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 FOXK1P85037 733 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 ZNF763Q0D2J5 394 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 MPP2Q14168 576 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 OR1C1Q15619 314 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 CHI3L2Q15782 390 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 IGFBP7Q16270 282 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 SPRED3Q2MJR0 410 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 KANK2Q63ZY3 851 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 NOXRED1Q6NXP6 359 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 HDXQ7Z353 690 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 DDIASQ8IXT1 998 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 TMEM156Q8N614 296 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 MIB2Q96AX9 1013 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 CNPPD1Q9BV87 410 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 LRTM1Q9HBL6 345 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 C1orf109Q9NX04 203 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 ANKRD10Q9NXR5 420 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 LRFN1Q9P244 771 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 MYOTQ9UBF9 498 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 ZNF223Q9UK11 482 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-201ENST00000332345 UTS2RQ9UKP6 389 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 VPS4AQ9UN37 437 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 CCL27Q9Y4X3 112 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 NBASA2RRP1 2371 aa13.03□□□□□ -0.32
LIMS1-201ENST00000332345 SPENQ96T58 3664 aaKnown RBP13.03□□□□□ -0.32
LIMS1-201ENST00000332345 TMEM114B3SHH9 223 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 ITGA10O75578 1167 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 HSPA4LO95757 839 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 IGKV3-11P04433 115 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 IL3P08700 152 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 NT5EP21589 574 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 FEN1P39748 380 aaKnown RBP13.02□□□□□ -0.33
LIMS1-201ENST00000332345 SSR4P51571 173 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 ABCE1P61221 599 aaKnown RBP13.02□□□□□ -0.33
LIMS1-201ENST00000332345 ERVK-8P63133 956 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 KCNC4Q03721 635 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 C2orf80Q0P641 193 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 NR6A1Q15406 480 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 INAQ16352 499 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 UGT3A2Q3SY77 523 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF766Q5HY98 468 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 SPINK14Q6IE38 97 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 RNF111Q6ZNA4 994 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 DGAT2L6Q6ZPD8 337 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 Q6ZSR9 355 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 SLC29A4Q7RTT9 530 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 KIRREL3Q8IZU9 778 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF321PQ8N8H1 164 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 ANKRD42Q8N9B4 389 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 TWIST2Q8WVJ9 160 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 TMEM125Q96AQ2 219 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 KLHL29Q96CT2 875 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 C5orf34Q96MH7 638 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 EBPLQ9BY08 206 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 TUBB1Q9H4B7 451 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 TRIM45Q9H8W5 580 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-201ENST00000332345 CXorf21Q9HAI6 301 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 RYDENQ9NUL5 291 aaKnown RBP13.02□□□□□ -0.33
LIMS1-201ENST00000332345 GIMAP4Q9NUV9 329 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 NKIRAS1Q9NYS0 192 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 EHD3Q9NZN3 535 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 ZDHHC2Q9UIJ5 367 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 ERVK-19Q9WJR5 959 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-201ENST00000332345 TMED5Q9Y3A6 229 aa13.02□□□□□ -0.33
LIMS1-201ENST00000332345 TMEM120BA0PK00 339 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 TMEM200CA6NKL6 621 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 OR6C76A6NM76 312 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 WWP2O00308 870 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 PRKNO60260 465 aaPredicted RBP13.01□□□□□ -0.33
LIMS1-201ENST00000332345 OR2J2O76002 312 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 RASAL1O95294 804 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 SP1P08047 785 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 DDCP20711 480 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 SLC1A6P48664 564 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 HK2P52789 917 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 MAP4K2Q12851 820 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 STX3Q13277 289 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 KIAA0040Q15053 153 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 AGBL2Q5U5Z8 902 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 SLC25A25Q6KCM7 469 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 FAM180AQ6UWF9 173 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 GALNT12Q8IXK2 581 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 GPALPP1Q8IXQ4 340 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 MMP21Q8N119 569 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 TMEM178AQ8NBL3 297 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 GALNT11Q8NCW6 608 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 MDS2Q8NDY4 140 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 OR7G1Q8NGA0 311 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 NUBPLQ8TB37 319 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 AGR3Q8TD06 166 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 TLCD1Q96CP7 247 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 C19orf60Q96EN9 201 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 PPP3R2Q96LZ3 170 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms