RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 FAM25AB3EWG3 89 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 FAM25CB3EWG5 89 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 FAM25GB3EWG6 89 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 NRG2O14511 850 aaPredicted RBP18.11■□□□□ 0.49
RTN4-201ENST00000317610 DDCP20711 480 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 ETV5P41161 510 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 ETV1P50549 477 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 PLK5Q496M5 336 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 ZNF628Q5EBL2 1059 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 C3orf38Q5JPI3 329 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 DEF8Q6ZN54 512 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 SLC9B2Q86UD5 537 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 RBM45Q8IUH3 476 aaKnown RBP18.11■□□□□ 0.49
RTN4-201ENST00000317610 NATD1Q8N6N6 113 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 GRPEL2Q8TAA5 225 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 ISYNA1Q9NPH2 558 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 SEMA3GQ9NS98 782 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 MRPS18AQ9NVS2 196 aaKnown RBP18.11■□□□□ 0.49
RTN4-201ENST00000317610 TVP23BQ9NYZ1 205 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 SPG21Q9NZD8 308 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 MAFFQ9ULX9 164 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 SF3B6Q9Y3B4 125 aaKnown RBP18.11■□□□□ 0.49
RTN4-201ENST00000317610 PLXND1Q9Y4D7 1925 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 TMCC2O75069 709 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 LEFTY1O75610 366 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 KIR2DL3P43628 341 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 RECQLP46063 649 aaPredicted RBP18.11■□□□□ 0.49
RTN4-201ENST00000317610 COX10Q12887 443 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 TARDBPQ13148 414 aaKnown RBP eCLIP18.11■□□□□ 0.493e-9■■■■■ 47
RTN4-201ENST00000317610 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.11■□□□□ 0.495e-18■□□□□ 10.6
RTN4-201ENST00000317610 Q5BKY6 102 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 PPP2R2DQ66LE6 453 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 LHX8Q68G74 356 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 KIAA1211LQ6NV74 962 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 TCTE3Q8IZS6 198 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 CELF5Q8N6W0 485 aaKnown RBP18.11■□□□□ 0.49
RTN4-201ENST00000317610 LMNTD1Q8N9Z9 388 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 ZNF740Q8NDX6 193 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 OR7G1Q8NGA0 311 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 KCTD7Q96MP8 289 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 SORBS1Q9BX66 1292 aaKnown RBP18.11■□□□□ 0.49
RTN4-201ENST00000317610 A4GNTQ9UNA3 340 aa18.11■□□□□ 0.49
RTN4-201ENST00000317610 TLX2O43763 284 aaPredicted RBP18.1■□□□□ 0.49
RTN4-201ENST00000317610 MMP20O60882 483 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 B4GALT2O60909 372 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 HLA-DQB1P01920 261 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 GPC1P35052 558 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 TSTA3Q13630 321 aaPredicted RBP18.1■□□□□ 0.49
RTN4-201ENST00000317610 TPBGQ13641 420 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 ATAT1Q5SQI0 421 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 SLC39A11Q8N1S5 342 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 IQCF1Q8N6M8 205 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 ZNF582Q96NG8 517 aaPredicted RBP18.1■□□□□ 0.49
RTN4-201ENST00000317610 WFDC6Q9BQY6 131 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 ACOXLQ9NUZ1 547 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 A0A1W2PRQ8 180 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 ANKDD1BA6NHY2 528 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 TSPAN19P0C672 248 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 TNNI3P19429 210 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 SDC2P34741 201 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 WNT4P56705 351 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 DAB2P98082 770 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 GALK2Q01415 458 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 NDUFA9Q16795 377 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 QSOX2Q6ZRP7 698 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 LAPTM4BQ86VI4 370 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 TMEM25Q86YD3 366 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 ADGRF3Q8IZF5 1079 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 AP3S1Q92572 193 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 ZC3HAV1LQ96H79 300 aaKnown RBP18.1■□□□□ 0.49
RTN4-201ENST00000317610 KATNB1Q9BVA0 655 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 MVB12BQ9H7P6 319 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 ANKRA2Q9H9E1 313 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 NEUROD4Q9HD90 331 aa18.1■□□□□ 0.49
RTN4-201ENST00000317610 FGF20Q9NP95 211 aaPredicted RBP18.1■□□□□ 0.49
RTN4-201ENST00000317610 SPIN1Q9Y657 262 aaPredicted RBP18.1■□□□□ 0.49
RTN4-201ENST00000317610 HMGN4O00479 90 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 LILRB5O75023 590 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 FHP07954 510 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 CPN2P22792 545 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 CDK5Q00535 292 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 KLHL22Q53GT1 634 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 ARSIQ5FYB1 569 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 SNAP47Q5SQN1 464 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 FAM180BQ6P0A1 224 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 ZNF730Q6ZMV8 503 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 ADIPOR2Q86V24 386 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 AUTS2Q8WXX7 1259 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 ZNF689Q96CS4 500 aaPredicted RBP18.09■□□□□ 0.49
RTN4-201ENST00000317610 AP2M1Q96CW1 435 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 SOSTQ9BQB4 213 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 ZNF717Q9BY31 904 aaPredicted RBP18.09■□□□□ 0.49
RTN4-201ENST00000317610 SIRT3Q9NTG7 399 aaPredicted RBP18.09■□□□□ 0.49
RTN4-201ENST00000317610 KIAA1549LQ6ZVL6 1849 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 HTTP42858 3142 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 TMEM129A0AVI4 362 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 ANHXE9PGG2 379 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 HCN1O60741 890 aa18.09■□□□□ 0.49
RTN4-201ENST00000317610 NME6O75414 186 aaPredicted RBP18.09■□□□□ 0.49
RTN4-201ENST00000317610 ACADMP11310 421 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms