RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 SIRT3Q9NTG7 399 aaPredicted RBP23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 AP1M2Q9Y6Q5 423 aa23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 CDRT1O95170 752 aa23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 CSTF2P33240 577 aaKnown RBP eCLIP23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 RPL3P39023 403 aaKnown RBP23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 TIMM50Q3ZCQ8 353 aa23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 OR2G6Q5TZ20 316 aa23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 KHDRBS2Q5VWX1 349 aaKnown RBP23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 GRASPQ7Z6J2 395 aaPredicted RBP23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 FAM129CQ86XR2 697 aa23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 ZFP41Q8N8Y5 198 aa23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 NEURL3Q96EH8 262 aa23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 TREX2Q9BQ50 279 aaPredicted RBP23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 TCF20Q9UGU0 1960 aaKnown RBP23.12■■□□□ 1.29
SPTSSA-201ENST00000298130 SCAMP1O15126 338 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 DHCR24Q15392 516 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 ZNF77Q15935 545 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 C22orf42Q6IC83 251 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 PODNL1Q6PEZ8 512 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 SPRED2Q7Z698 418 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 TFGQ92734 400 aaPredicted RBP23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 ZNF486Q96H40 463 aaPredicted RBP23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 DDX28Q9NUL7 540 aaKnown RBP23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 SAGE1Q9NXZ1 904 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 RANBP2P49792 3224 aaKnown RBP23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 FRS3O43559 492 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 PI15O43692 258 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 ADAP00813 363 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 PSMA1P25786 263 aaKnown RBP23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 BSGP35613 385 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 BCL2A1Q16548 175 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 ACSM5Q6NUN0 579 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 ANKRD33Q7Z3H0 272 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 SYT14Q8NB59 555 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 LHX9Q9NQ69 397 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 TOR4AQ9NXH8 423 aa23.11■■□□□ 1.29
SPTSSA-201ENST00000298130 A0A1W2PS29 197 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 SRPRAP08240 638 aaKnown RBP23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 CCT3P49368 545 aaKnown RBP23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 ST8SIA6P61647 398 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 ELOAQ14241 798 aaKnown RBP23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 ZNF79Q15937 498 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 FLYWCH1Q4VC44 716 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 USP30Q70CQ3 517 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 LGR4Q9BXB1 951 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 NUMA1Q14980 2115 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 SLITRK5O94991 958 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 PAPLNO95428 1278 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 MAP4K2Q12851 820 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 ILKQ13418 452 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 AGAP6Q5VW22 663 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 IQCHQ86VS3 1027 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 C17orf64Q86WR6 236 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 AGAP4Q96P64 663 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 WBP11Q9Y2W2 641 aaKnown RBP23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 V9GYH0 126 aa23.1■■□□□ 1.29
SPTSSA-201ENST00000298130 A0A0C4DFX4 3053 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 A8MVJ9 347 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 LCMT2O60294 686 aaKnown RBP23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 MPZL2O60487 215 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 ETV5P41161 510 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 VIPR2P41587 438 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 ETV1P50549 477 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 MLLT1Q03111 559 aaPredicted RBP23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 HEPACAMQ14CZ8 416 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 CCDC92Q53HC0 331 aaPredicted RBP23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 ATAT1Q5SQI0 421 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 ARMC4Q5T2S8 1044 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 SLX4IPQ5VYV7 408 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 TMPRSS11AQ6ZMR5 421 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 SMPDL3AQ92484 453 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 OR51I1Q9H343 314 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 XKR8Q9H6D3 395 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 NFKBIL1Q9UBC1 381 aaPredicted RBP23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 OR1F1O43749 312 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 GPC1P35052 558 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 RFX2P48378 723 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 TEKQ02763 1124 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 DEFB115Q30KQ5 88 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 ZER1Q7Z7L7 766 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 KRT78Q8N1N4 520 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 LRR1Q96L50 414 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 BEX2Q9BXY8 128 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 OR52A5Q9H2C5 316 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 ABCB9Q9NP78 766 aa23.09■■□□□ 1.29
SPTSSA-201ENST00000298130 MYL12BO14950 172 aa23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 UGT2B17O75795 530 aa23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 SNX4O95219 450 aa23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 TP53P04637 393 aaPredicted RBP23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 C8orf89P0DMQ9 161 aa23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 NR2F1P10589 423 aa23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 HOXB3P14651 431 aaPredicted RBP23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 MMP11P24347 488 aa23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 KCNJ5P48544 419 aa23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 GINS1Q14691 196 aa23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 GPR19Q15760 415 aa23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 FNDC3BQ53EP0 1204 aaKnown RBP23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 UNC5DQ6UXZ4 953 aa23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 MMAAQ8IVH4 418 aaKnown RBP23.08■■□□□ 1.29
SPTSSA-201ENST00000298130 PHC2Q8IXK0 858 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms