RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 DHRS1Q96LJ7 313 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 UBXN10Q96LJ8 280 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 SMIM14Q96QK8 99 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 CTRCQ99895 268 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 RBM38Q9H0Z9 239 aaKnown RBP14.67□□□□□ -0.06
SHH-201ENST00000297261 TREM1Q9NP99 234 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 PTPRFP10586 1907 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 LOC102723532A0A0G2JNH3 316 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 JUNBP17275 347 aaPredicted RBP14.67□□□□□ -0.06
SHH-201ENST00000297261 PREPP48147 710 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 ZNF763Q0D2J5 394 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 CPZQ66K79 652 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 SLC25A24Q6NUK1 477 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 FAM180BQ6P0A1 224 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 SLC27A4Q6P1M0 643 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 ZNF782Q6ZMW2 699 aaPredicted RBP14.67□□□□□ -0.06
SHH-201ENST00000297261 CNTN4Q8IWV2 1026 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 OR5J2Q8NH18 312 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 BOCQ9BWV1 1114 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 SPHK2Q9NRA0 654 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 ALPPP05187 535 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 ALPPL2P10696 532 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 MANEALQ5VSG8 457 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 FAM46CQ5VWP2 391 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 MEDAGQ5VYS4 303 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 POMZP3Q6PJE2 187 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 SLC36A4Q6YBV0 504 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 BTLAQ7Z6A9 289 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 PHYKPLQ8IUZ5 450 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 NUDT8Q8WV74 236 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 TXNDC15Q96J42 360 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 GON7Q9BXV9 100 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 ADAP2Q9NPF8 381 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 TAS2R3Q9NYW6 316 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 GPR52Q9Y2T5 361 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 YARS2Q9Y2Z4 477 aaKnown RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 PLXNA1Q9UIW2 1896 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 KANTRA0A1W2PQU2 76 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 MUSKO15146 869 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 GPR39O43194 453 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 SULT1C4O75897 302 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 F8A1P23610 371 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 HNF1BP35680 557 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 RPL35P42766 123 aaKnown RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 TBCEQ15813 527 aaPredicted RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 ANKRD34AQ69YU3 496 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 PLAG1Q6DJT9 500 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 KLBQ86Z14 1044 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 GALNT11Q8NCW6 608 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 RELTQ969Z4 430 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 REEP4Q9H6H4 257 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 CWH43Q9H720 699 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 ARL6IP5O75915 188 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 FSHRP23945 695 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 GGT2P36268 569 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 SGSHP51688 502 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 GBX2P52951 348 aaPredicted RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 EMP3P54852 163 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 SFRP4Q6FHJ7 346 aaPredicted RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 RAB12Q6IQ22 244 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 BHLHA9Q7RTU4 235 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 SLC30A8Q8IWU4 369 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 PGBD5Q8N414 524 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 BEND7Q8N7W2 519 aaPredicted RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 DNAJA4Q8WW22 397 aaPredicted RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 GGHQ92820 318 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 MCCC1Q96RQ3 725 aaPredicted RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 TAS2R16Q9NYV7 291 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 B4GALT6Q9UBX8 382 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 GPSM3Q9Y4H4 160 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 OARD1Q9Y530 152 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 BRCA1P38398 1863 aaKnown RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 TEX13CA0A0J9YWL9 993 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 SMAD6O43541 496 aaKnown RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 RPP14O95059 124 aaKnown RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 HOXD9P28356 352 aaPredicted RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 ADRA1AP35348 466 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 CEBPGP53567 150 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 NDUFA9Q16795 377 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 SOWAHCQ53LP3 525 aaPredicted RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 GPR149Q86SP6 731 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 SORCS1Q8WY21 1168 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 COQ10AQ96MF6 247 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 EXOSC1Q9Y3B2 195 aaKnown RBP14.66□□□□□ -0.06
SHH-201ENST00000297261 WDR90Q96KV7 1748 aa14.66□□□□□ -0.06
SHH-201ENST00000297261 LRRN3E7EW58 273 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 PRMT3O60678 531 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 MRPL3P09001 348 aaKnown RBP14.65□□□□□ -0.06
SHH-201ENST00000297261 EPCAMP16422 314 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 LIPAP38571 399 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 GPR19Q15760 415 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 ZNF791Q3KP31 576 aaPredicted RBP14.65□□□□□ -0.06
SHH-201ENST00000297261 GPRC6AQ5T6X5 926 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 LRRN1Q6UXK5 716 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 RPTNQ6XPR3 784 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 PARGQ86W56 976 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 ZNF548Q8NEK5 533 aaPredicted RBP14.65□□□□□ -0.06
SHH-201ENST00000297261 CD200R1Q8TD46 325 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 BHLHE41Q9C0J9 482 aaPredicted RBP14.65□□□□□ -0.06
SHH-201ENST00000297261 OR2AG1Q9H205 316 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms