RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 UGT2B7P16662 529 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 ZNF182P17025 639 aaPredicted RBP15.91■□□□□ 0.14
CPSF4-201ENST00000292476 CD247P20963 164 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 CSNK1EP49674 416 aaKnown RBP15.91■□□□□ 0.14
CPSF4-201ENST00000292476 CLK3P49761 638 aaKnown RBP15.91■□□□□ 0.14
CPSF4-201ENST00000292476 STXBP1P61764 594 aaKnown RBP15.91■□□□□ 0.14
CPSF4-201ENST00000292476 BNIP3Q12983 259 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 RGNQ15493 299 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 IQCCQ4KMZ1 466 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 SLC16A12Q6ZSM3 486 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 PAQR7Q86WK9 346 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 TTC29Q8NA56 475 aaPredicted RBP15.91■□□□□ 0.14
CPSF4-201ENST00000292476 SMYD1Q8NB12 490 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 OR10G6Q8NH81 332 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 FAR1Q8WVX9 515 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 C7orf34Q96L11 122 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 GABARAPL3Q9BY60 117 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 RIBC2Q9H4K1 309 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 REEP4Q9H6H4 257 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 KRT84Q9NSB2 600 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 FAIMQ9NVQ4 179 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 PDP1Q9P0J1 537 aaPredicted RBP15.91■□□□□ 0.14
CPSF4-201ENST00000292476 KIF17Q9P2E2 1029 aa15.91■□□□□ 0.14
CPSF4-201ENST00000292476 WARS2Q9UGM6 360 aaKnown RBP15.91■□□□□ 0.14
CPSF4-201ENST00000292476 GON4LQ3T8J9 2241 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 URADA6NGE7 173 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 A8MVJ9 347 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 MYO1GB0I1T2 1018 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 HAT1O14929 419 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 SLC22A1O15245 554 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 YY2O15391 372 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 SUV39H1O43463 412 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 LCMT2O60294 686 aaKnown RBP15.9■□□□□ 0.14
CPSF4-201ENST00000292476 CBFA2T3O75081 653 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 GUCY1B2O75343 617 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 KLK1P06870 262 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 POLR2CP19387 275 aaPredicted RBP15.9■□□□□ 0.14
CPSF4-201ENST00000292476 GP2P55259 537 aaKnown RBP15.9■□□□□ 0.14
CPSF4-201ENST00000292476 CYP4F2P78329 520 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 PDE7AQ13946 482 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 HEPACAMQ14CZ8 416 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 ZIC1Q15915 447 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 HKDC1Q2TB90 917 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 PROX2Q3B8N5 592 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.9■□□□□ 0.14
CPSF4-201ENST00000292476 B3GNT8Q7Z7M8 397 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 CDC26Q8NHZ8 85 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.9■□□□□ 0.14
CPSF4-201ENST00000292476 CREB3L4Q8TEY5 395 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 PATE1Q8WXA2 126 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 JPH3Q8WXH2 748 aaPredicted RBP15.9■□□□□ 0.14
CPSF4-201ENST00000292476 SGCDQ92629 289 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 DOHHQ9BU89 302 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 SMOC1Q9H4F8 434 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 PARD6AQ9NPB6 346 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 NECTIN3Q9NQS3 549 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 ERVK-11Q9UQG0 969 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 PCDHGB3Q9Y5G1 929 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 PCDHGA4Q9Y5G9 962 aa15.9■□□□□ 0.14
CPSF4-201ENST00000292476 A0A0J9YY10 115 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 OR2A25A4D2G3 310 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 LRIT2A6NDA9 550 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 OR5K3A6NET4 321 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 LILRA5A6NI73 299 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 TMX2-CTNND1H3BSU7 103 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 SAP18O00422 153 aaKnown RBP15.89■□□□□ 0.13
CPSF4-201ENST00000292476 PLPP1O14494 284 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 ADAMDEC1O15204 470 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 MITFO75030 526 aaPredicted RBP15.89■□□□□ 0.13
CPSF4-201ENST00000292476 SERPIND1P05546 499 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 BCL6P41182 706 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 ARRB1P49407 418 aaPredicted RBP15.89■□□□□ 0.13
CPSF4-201ENST00000292476 MAPK12P53778 367 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 KCNJ10P78508 379 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 TEKQ02763 1124 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 RGS1Q08116 209 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 PPP1R8Q12972 351 aaKnown RBP15.89■□□□□ 0.13
CPSF4-201ENST00000292476 FADDQ13158 208 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 TMED1Q13445 227 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 MAD2L1BPQ15013 274 aaPredicted RBP15.89■□□□□ 0.13
CPSF4-201ENST00000292476 ADPRMQ3LIE5 342 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 SYT6Q5T7P8 510 aaPredicted RBP15.89■□□□□ 0.13
CPSF4-201ENST00000292476 OGFOD3Q6PK18 319 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 VTCN1Q7Z7D3 282 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 ZNF655Q8N720 491 aaPredicted RBP15.89■□□□□ 0.13
CPSF4-201ENST00000292476 C16orf78Q8WTQ4 265 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 RORBQ92753 470 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 HSPBAP1Q96EW2 488 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 PLEKHA8Q96JA3 519 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 LOXL4Q96JB6 756 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 KCNC2Q96PR1 638 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 F2RL3Q96RI0 385 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 ZNF347Q96SE7 839 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 CSF3RQ99062 836 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 ROGDIQ9GZN7 287 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 THUMPD1Q9NXG2 353 aaKnown RBP15.89■□□□□ 0.13
CPSF4-201ENST00000292476 GVINP1Q7Z2Y8 2422 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 hCG_2039718K7EN88 272 aa15.89■□□□□ 0.13
CPSF4-201ENST00000292476 BCAS1O75363 584 aaPredicted RBP15.89■□□□□ 0.13
CPSF4-201ENST00000292476 PIAS2O75928 621 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms