RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 GIN1Q9NXP7 522 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 IFT52Q9Y366 437 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 URB1O60287 2271 aaKnown RBP10.97□□□□□ -0.65
VPS4A-201ENST00000254950 PRR35P0CG20 571 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 SAGP10523 405 aaPredicted RBP10.97□□□□□ -0.65
VPS4A-201ENST00000254950 POU3F3P20264 500 aaPredicted RBP10.97□□□□□ -0.65
VPS4A-201ENST00000254950 PCGF2P35227 344 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 RPL4P36578 427 aaKnown RBP10.97□□□□□ -0.65
VPS4A-201ENST00000254950 SIGLEC14Q08ET2 396 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 TLDC1Q6P9B6 456 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 MS4A6EQ96DS6 147 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 MS4A4EQ96PG1 132 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 CD93Q9NPY3 652 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 NDUFB5O43674 189 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 LCMT2O60294 686 aaKnown RBP10.96□□□□□ -0.65
VPS4A-201ENST00000254950 PRPH2P23942 346 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 PSMB9P28065 219 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 XCR1P46094 333 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 TNFRSF17Q02223 184 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 MERTKQ12866 999 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 TOMM20Q15388 145 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 BROXQ5VW32 411 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 FAM81AQ8TBF8 368 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 ALOXE3Q9BYJ1 711 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 KAT8Q9H7Z6 458 aaKnown RBP10.96□□□□□ -0.65
VPS4A-201ENST00000254950 VILLO15195 856 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 HMGN2P05204 90 aaKnown RBP10.96□□□□□ -0.65
VPS4A-201ENST00000254950 C8BP07358 591 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 POU2F1P14859 743 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 OR1E2P47887 323 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 OR1D5P58170 312 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 SELPLGQ14242 412 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 NSDHLQ15738 373 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 ARTNQ5T4W7 220 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 RNF111Q6ZNA4 994 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 RNF165Q6ZSG1 346 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 GALNT10Q86SR1 603 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 CARM1Q86X55 608 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 METTL25Q8N6Q8 603 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 BAHD1Q8TBE0 780 aaPredicted RBP10.96□□□□□ -0.65
VPS4A-201ENST00000254950 NETO1Q8TDF5 533 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 MAN2B2Q9Y2E5 1009 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 LYVE1Q9Y5Y7 322 aa10.96□□□□□ -0.65
VPS4A-201ENST00000254950 POLR1CO15160 346 aaPredicted RBP10.96□□□□□ -0.66
VPS4A-201ENST00000254950 SCN2BO60939 215 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 PIAS2O75928 621 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 CD22P20273 847 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 CSRP3P50461 194 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 STARD6P59095 220 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 GARNL3Q5VVW2 1013 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 PTCHD4Q6ZW05 846 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 CDRT4Q8N9R6 151 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 TBC1D20Q96BZ9 403 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 MRPL48Q96GC5 212 aaKnown RBP10.96□□□□□ -0.66
VPS4A-201ENST00000254950 POLR2J3Q9H1A7 115 aaKnown RBP10.96□□□□□ -0.66
VPS4A-201ENST00000254950 SPNS1Q9H2V7 528 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 CUTCQ9NTM9 273 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 ARMC1Q9NVT9 282 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 PPT2Q9UMR5 302 aa10.96□□□□□ -0.66
VPS4A-201ENST00000254950 LILRA5A6NI73 299 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 SCDO00767 359 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 LDB3O75112 727 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ETHE1O95571 254 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ST6GAL1P15907 406 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 MYL12AP19105 171 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 TPP2P29144 1249 aaPredicted RBP10.95□□□□□ -0.66
VPS4A-201ENST00000254950 CAPZBP47756 277 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 FLYWCH1Q4VC44 716 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 CDC73Q6P1J9 531 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ENPP6Q6UWR7 440 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 VWA5B2Q8N398 1253 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 LINC00471Q8N535 108 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ZNF540Q8NDQ6 660 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 NR4A3Q92570 626 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 PAIP1Q9H074 479 aaKnown RBP10.95□□□□□ -0.66
VPS4A-201ENST00000254950 GORASP2Q9H8Y8 452 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ATG4BQ9Y4P1 393 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 LILRB5O75023 590 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 STX11O75558 287 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 CPNE6O95741 557 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ALDH3A2P51648 485 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 RAB38P57729 211 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ZP2Q05996 745 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ST3GAL3Q11203 375 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 TARDBPQ13148 414 aaKnown RBP eCLIP10.95□□□□□ -0.66
VPS4A-201ENST00000254950 NKAIN2Q5VXU1 208 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ADGRG5Q8IZF4 528 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 B4GALNT2Q8NHY0 566 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 SFXN5Q8TD22 340 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 CEP19Q96LK0 163 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ZNF583Q96ND8 569 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 TRAPPC9Q96Q05 1148 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 MYCBPQ99417 103 aaPredicted RBP10.95□□□□□ -0.66
VPS4A-201ENST00000254950 EPS8L2Q9H6S3 715 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 DDX31Q9H8H2 851 aaKnown RBP10.95□□□□□ -0.66
VPS4A-201ENST00000254950 CCNB1IP1Q9NPC3 277 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 FGF21Q9NSA1 209 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.95□□□□□ -0.66
VPS4A-201ENST00000254950 TEKT2Q9UIF3 430 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 MYO10Q9HD67 2058 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms