RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 CATP04040 527 aaKnown RBP11.77□□□□□ -0.53
NUP88-201ENST00000225696 CCNYL3P0C7X3 344 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 SOX18P35713 384 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 HTR2BP41595 481 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 WDR5P61964 334 aaKnown RBP11.77□□□□□ -0.53
NUP88-201ENST00000225696 TATDN3Q17R31 274 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 MEDAGQ5VYS4 303 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 TMCO2Q7Z6W1 182 aaPredicted RBP11.77□□□□□ -0.53
NUP88-201ENST00000225696 C11orf74Q86VG3 221 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 ADGRF3Q8IZF5 1079 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 OR4M1Q8NGD0 313 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 OR8J1Q8NGP2 316 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 SORCS1Q8WY21 1168 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 C1GALT1C1Q96EU7 318 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 LRR1Q96L50 414 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 CITED4Q96RK1 184 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 SLA2Q9H6Q3 261 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 COMMD3Q9UBI1 195 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 HCN2Q9UL51 889 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 TMCC3Q9ULS5 477 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 HS3ST2Q9Y278 367 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 GPR52Q9Y2T5 361 aa11.77□□□□□ -0.53
NUP88-201ENST00000225696 SHISA3A0PJX4 238 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.76□□□□□ -0.53
NUP88-201ENST00000225696 M0R3H8 397 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 TBX6O95947 436 aaPredicted RBP11.76□□□□□ -0.53
NUP88-201ENST00000225696 IL1AP01583 271 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 URODP06132 367 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 TRAPPC2P0DI81 140 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 TRAPPC2BP0DI82 140 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 PSKH1P11801 424 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 SELPP16109 830 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 CPEP16870 476 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 POLR2EP19388 210 aaKnown RBP11.76□□□□□ -0.53
NUP88-201ENST00000225696 ALAS2P22557 587 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 PTGER1P34995 402 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 GSTM5P46439 218 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 TM4SF4P48230 202 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 GNG2P59768 71 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 FABP5Q01469 135 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.76□□□□□ -0.53
NUP88-201ENST00000225696 ZNF628Q5EBL2 1059 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 HENMT1Q5T8I9 393 aaKnown RBP11.76□□□□□ -0.53
NUP88-201ENST00000225696 RFPL4BQ6ZWI9 263 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 TECPR1Q7Z6L1 1165 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 RNF180Q86T96 592 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 OR2A12Q8NGT7 310 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 IGSF21Q96ID5 467 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 FUZQ9BT04 418 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 PRR14Q9BWN1 585 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 PLA2G12AQ9BZM1 189 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 SERHL2Q9H4I8 314 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 MYNNQ9NPC7 610 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 TESQ9UGI8 421 aaKnown RBP11.76□□□□□ -0.53
NUP88-201ENST00000225696 SF3B6Q9Y3B4 125 aaKnown RBP11.76□□□□□ -0.53
NUP88-201ENST00000225696 ALG5Q9Y673 324 aa11.76□□□□□ -0.53
NUP88-201ENST00000225696 WASHC1A8K0Z3 465 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 DVL2O14641 736 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 C1orf105O95561 183 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 POP4O95707 220 aaKnown RBP11.75□□□□□ -0.53
NUP88-201ENST00000225696 LALBAP00709 142 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 H1F0P07305 194 aaKnown RBP11.75□□□□□ -0.53
NUP88-201ENST00000225696 MMP11P24347 488 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 GABRR2P28476 465 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 MLLT3P42568 568 aaPredicted RBP11.75□□□□□ -0.53
NUP88-201ENST00000225696 DGKGP49619 791 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 FAPQ12884 760 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 GPR19Q15760 415 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 CRTC2Q53ET0 693 aaPredicted RBP11.75□□□□□ -0.53
NUP88-201ENST00000225696 PODNL1Q6PEZ8 512 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 TMEM220Q6QAJ8 160 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 WASH2PQ6VEQ5 465 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 GDPD4Q6W3E5 623 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 ZER1Q7Z7L7 766 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 TMEM25Q86YD3 366 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 FGF11Q92914 225 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 UPRTQ96BW1 309 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 SENP5Q96HI0 755 aaPredicted RBP11.75□□□□□ -0.53
NUP88-201ENST00000225696 SCLYQ96I15 445 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 RIPOR3Q96MK2 946 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 ZNF582Q96NG8 517 aaPredicted RBP11.75□□□□□ -0.53
NUP88-201ENST00000225696 IL17FQ96PD4 163 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 TMEM175Q9BSA9 504 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 CPEB1Q9BZB8 566 aaKnown RBP11.75□□□□□ -0.53
NUP88-201ENST00000225696 TRPV5Q9NQA5 729 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 SEMA3GQ9NS98 782 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 RNF186Q9NXI6 227 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 NLKQ9UBE8 527 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 ENOPH1Q9UHY7 261 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 CCL26Q9Y258 94 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 ITM2BQ9Y287 266 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 A0A1W2PQ45 241 aaPredicted RBP11.75□□□□□ -0.53
NUP88-201ENST00000225696 A0A1W2PQY0 241 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 ANHXE9PGG2 379 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 HPGDSO60760 199 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 ZNF780AO75290 641 aaPredicted RBP11.75□□□□□ -0.53
NUP88-201ENST00000225696 LGI1O95970 557 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 C1GALT1C1LP0DN25 315 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 WEE1P30291 646 aa11.75□□□□□ -0.53
NUP88-201ENST00000225696 RAB25P57735 213 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms