RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 RPL26P61254 145 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NFIXQ14938 502 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 EXOSC7Q15024 291 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 P2RY14Q15391 338 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 HMGN3Q15651 99 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RPL13AP3Q6NVV1 102 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 INTS5Q6P9B9 1019 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 XKR5Q6UX68 686 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF619Q8N2I2 560 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FAM46DQ8NEK8 389 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR8J1Q8NGP2 316 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR4Q3Q8NH05 313 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 LRTOMTQ8WZ04 291 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NSMAFQ92636 917 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZSWIM1Q9BR11 485 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 AGXT2Q9BYV1 514 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC5A7Q9GZV3 580 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CDH20Q9HBT6 801 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 EIF2B3Q9NR50 452 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MRPL22Q9NWU5 206 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SNTG2Q9NY99 539 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GIMAP2Q9UG22 337 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 LAMP5Q9UJQ1 280 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC45A1Q9Y2W3 748 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ADAM20O43506 726 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DCXO43602 365 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ECI2O75521 394 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RGS11O94810 467 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NELFEP18615 380 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RAB3BP20337 219 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GSK3AP49840 483 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ERVK-25P63136 954 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GPR19Q15760 415 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NKAPLQ5M9Q1 402 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FHL5Q5TD97 284 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 AADACL2Q6P093 401 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ARSKQ6UWY0 536 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC15A3Q8IY34 581 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC34A3Q8N130 599 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 HPSE2Q8WWQ2 592 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZBED3Q96IU2 234 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 HRASLS5Q96KN8 279 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RBP7Q96R05 134 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CPNE1Q99829 537 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ERVK-6Q9BXR3 956 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PNPOQ9NVS9 261 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 POMT1Q9Y6A1 747 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SPATA31A3Q5VYP0 1347 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MADDQ8WXG6 1647 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 BRCA1P38398 1863 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC15A5A6NIM6 579 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 E7ESA3 106 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MAP2K7O14733 419 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SRPRAP08240 638 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TYMPP19971 482 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 EVI2BP34910 448 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RAD52P43351 418 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DSTNP60981 165 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 C19orf57Q0VDD7 668 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF460Q14592 562 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TBCEQ15813 527 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 VITQ6UXI7 678 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 STAC2Q6ZMT1 411 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR52K1Q8NGK4 314 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 HAS2Q92819 552 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TTPALQ9BTX7 342 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NT5DC2Q9H857 520 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 HES4Q9HCC6 221 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PREBQ9HCU5 417 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 C2orf42Q9NWW7 574 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GDAP2Q9NXN4 497 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SMPD3Q9NY59 655 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF282Q9UDV7 671 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PDXKO00764 312 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC22A2O15244 555 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 B4GALT2O60909 372 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CLDN11O75508 207 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC6A4P31645 630 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CRYBB1P53674 252 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FGL1Q08830 312 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 EFEMP1Q12805 493 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 UBAP2LQ14157 1087 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GRB7Q14451 532 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GNMTQ14749 295 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 IZUMO4Q1ZYL8 232 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF628Q5EBL2 1059 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 HYIQ5T013 277 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 B3GLCTQ6Y288 498 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GK5Q6ZS86 529 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GPR142Q7Z601 462 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CATSPERDQ86XM0 798 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FAM126BQ8IXS8 530 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 C8orf58Q8NAV2 365 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR10H4Q8NGA5 316 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC38A5Q8WUX1 472 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZFPM2Q8WW38 1151 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 HSD17B8Q92506 261 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PMM1Q92871 262 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FUNDC2Q9BWH2 189 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ELAC1Q9H777 363 aaKnown RBP2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms