RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 FXNQ16595 210 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 INAVAQ3KP66 663 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 GLYATQ6IB77 296 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 PTOV1Q86YD1 416 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 SLITRK4Q8IW52 837 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 SIMC1Q8NDZ2 872 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 FIG4Q92562 907 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 KAT2AQ92830 837 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 CHST8Q9H2A9 424 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 S100A14Q9HCY8 104 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 ACTR3BQ9P1U1 418 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 ENTPD4Q9Y227 616 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 ZNF780BQ9Y6R6 833 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 CFAP54Q96N23 3096 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 D6RAR5 112 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 H3BNX3 289 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 CSNK2A2P19784 350 aaPredicted RBP18.91■□□□□ 0.62
CLN3-250ENST00000636839 UQCRC2P22695 453 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 GPC1P35052 558 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 CRATP43155 626 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 ITGA1P56199 1179 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 RAB38P57729 211 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 CYP51A1Q16850 503 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 SPATS1Q496A3 300 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 C1orf189Q5VU69 101 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 GARNL3Q5VVW2 1013 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 OR52E8Q6IFG1 317 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 TMEM107Q6UX40 140 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 OR4K14Q8NGD5 310 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 OR6C1Q96RD1 312 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 NPLQ9BXD5 320 aaPredicted RBP18.91■□□□□ 0.62
CLN3-250ENST00000636839 OCIAD1Q9NX40 245 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 FTSJ1Q9UET6 329 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 SERTAD3Q9UJW9 196 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 SNX13Q9Y5W8 968 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 V9GYQ6 96 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 OTOGLQ3ZCN5 2332 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 SEC16AO15027 2179 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 ELOVL7A1L3X0 281 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 ANKRD34CP0C6C1 535 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 GGT1P19440 569 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 GCGRP47871 477 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 CLDN6P56747 220 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 MRPS35P82673 323 aaKnown RBP18.91■□□□□ 0.62
CLN3-250ENST00000636839 ABHD18Q0P651 414 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 SZRD1Q7Z422 152 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 GALNT10Q86SR1 603 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 ZZZ3Q8IYH5 903 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 MICU2Q8IYU8 434 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 TRIML2Q8N7C3 387 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 SLCO4A1Q96BD0 722 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 ANKRD9Q96BM1 317 aaPredicted RBP18.91■□□□□ 0.62
CLN3-250ENST00000636839 APMAPQ9HDC9 416 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 PSME2Q9UL46 239 aa18.91■□□□□ 0.62
CLN3-250ENST00000636839 EP300Q09472 2414 aaPredicted RBP18.9■□□□□ 0.62
CLN3-250ENST00000636839 C4orf47A7E2U8 309 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 TGFBR3LH3BV60 316 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 ACP1P24666 158 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 SOX18P35713 384 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 CCT3P49368 545 aaKnown RBP18.9■□□□□ 0.62
CLN3-250ENST00000636839 PDX1P52945 283 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 BTG2P78543 158 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 MLC1Q15049 377 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 CEBPEQ15744 281 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 SNCBQ16143 134 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 SPDYE7PQ495Y7 208 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 LCN8Q6JVE9 175 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 C6orf120Q7Z4R8 191 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 SERPINA11Q86U17 422 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 GPR135Q8IZ08 494 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 NATD1Q8N6N6 113 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 SLC38A9Q8NBW4 561 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 OR51Q1Q8NH59 317 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 PSMA8Q8TAA3 256 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 PPWD1Q96BP3 646 aaKnown RBP18.9■□□□□ 0.62
CLN3-250ENST00000636839 OTUB1Q96FW1 271 aaPredicted RBP18.9■□□□□ 0.62
CLN3-250ENST00000636839 DCLRE1BQ9H816 532 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 TCRBV3S1A0A5B6 114 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 FAM220BPB1ANY3 271 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 PRKAG1P54619 331 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 SESN3P58005 492 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 TP53BP2Q13625 1128 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 PACS2Q86VP3 889 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 NAXDQ8IW45 347 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 NETO1Q8TDF5 533 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 JADE3Q92613 823 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 REXO5Q96IC2 774 aaKnown RBP18.9■□□□□ 0.62
CLN3-250ENST00000636839 LRGUKQ96M69 825 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 SERHL2Q9H4I8 314 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 SPACA6W5XKT8 324 aa18.9■□□□□ 0.62
CLN3-250ENST00000636839 GSTA4O15217 222 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 CBFA2T3O75081 653 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 BAG2O95816 211 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 MSL3P1P0C860 447 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 DDX5P17844 614 aaKnown RBP18.89■□□□□ 0.61
CLN3-250ENST00000636839 MPIP34949 423 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 MC3RP41968 323 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 AVPR1BP47901 424 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 RHDQ02161 417 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 FAM214AQ32MH5 1076 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms