RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 GLOD5A6NK44 160 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 ENO4A6NNW6 628 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 A8MUA0 341 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 PIP5K1BO14986 540 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 LDB3O75112 727 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 GUCY1B2O75343 617 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 RSL1D1O76021 490 aaKnown RBP16.66■□□□□ 0.26
CLN3-247ENST00000636351 IFNA16P05015 189 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 LINC00032P0C843 101 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 TRIM46Q7Z4K8 759 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 TRIM42Q8IWZ5 723 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 HOMEZQ8IX15 550 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 CDC26Q8NHZ8 85 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 CHTF18Q8WVB6 975 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 TUBB6Q9BUF5 446 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 PNO1Q9NRX1 252 aaKnown RBP16.66■□□□□ 0.26
CLN3-247ENST00000636351 AGPAT4Q9NRZ5 378 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 TEX10Q9NXF1 929 aaPredicted RBP16.66■□□□□ 0.26
CLN3-247ENST00000636351 ZDHHC2Q9UIJ5 367 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 MCM8Q9UJA3 840 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 IGKV3D-11A0A0A0MRZ8 115 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 A0A1W2PR48 441 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 TCRBV16S1A1N1A0A5B0 115 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 PROM1O43490 865 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 CTNSO60931 367 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 MYO1DO94832 1006 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 SNUPNO95149 360 aaKnown RBP16.65■□□□□ 0.26
CLN3-247ENST00000636351 FGF4P08620 206 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 PPP2R1BP30154 601 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 TIA1P31483 386 aaKnown RBP eCLIP16.65■□□□□ 0.26
CLN3-247ENST00000636351 BST1Q10588 318 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 BTBD16Q32M84 506 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 NDUFAF5Q5TEU4 345 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 ATG16L1Q676U5 607 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 OR52E8Q6IFG1 317 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 KBTBD2Q8IY47 623 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 ST6GALNAC3Q8NDV1 305 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 DYDC1Q8WWB3 177 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 THOC3Q96J01 351 aaKnown RBP16.65■□□□□ 0.26
CLN3-247ENST00000636351 FAIM2Q9BWQ8 316 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 ZNF395Q9H8N7 513 aaPredicted RBP16.65■□□□□ 0.26
CLN3-247ENST00000636351 LRTM1Q9HBL6 345 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 RAP2CQ9Y3L5 183 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 POLR3HQ9Y535 204 aaPredicted RBP16.65■□□□□ 0.26
CLN3-247ENST00000636351 DNAJC15Q9Y5T4 150 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 CREBBPQ92793 2442 aa16.65■□□□□ 0.26
CLN3-247ENST00000636351 A0A1W2PQ72 361 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 SYNDIG1LA6NDD5 238 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 TGFBR3LH3BV60 316 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 FGF17O60258 216 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 SEC22BO75396 215 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 ALDH9A1P49189 494 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 AP2B1P63010 937 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 PPP2R2AP63151 447 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 FOLH1Q04609 750 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 SERTAD2Q14140 314 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 PDCD2Q16342 344 aaPredicted RBP16.64■□□□□ 0.25
CLN3-247ENST00000636351 EXT1Q16394 746 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 OR4N5Q8IXE1 308 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 ZNF781Q8N8C0 355 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 TANKQ92844 425 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 LHPPQ9H008 270 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 TUBB1Q9H4B7 451 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 PFDN4Q9NQP4 134 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 C1orf109Q9NX04 203 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 CELSR2Q9HCU4 2923 aa16.64■□□□□ 0.25
CLN3-247ENST00000636351 SAGE2PA6NJ88 616 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 CELA2AP08217 269 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 ANXA4P09525 319 aaPredicted RBP16.63■□□□□ 0.25
CLN3-247ENST00000636351 PRR35P0CG20 571 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 ICAM2P13598 275 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 TAS2R50P59544 299 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 RPL38P63173 70 aaKnown RBP16.63■□□□□ 0.25
CLN3-247ENST00000636351 RAE1P78406 368 aaKnown RBP16.63■□□□□ 0.25
CLN3-247ENST00000636351 ZNF763Q0D2J5 394 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 GALNTL6Q49A17 601 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 HSP90B2PQ58FF3 399 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 AGAP7PQ5VUJ5 663 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 IGFL2Q6UWQ7 119 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 RNF165Q6ZSG1 346 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 KIRREL3Q8IZU9 778 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 OR2T11Q8NH01 316 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 DNAJB14Q8TBM8 379 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 RAB3IL1Q8TBN0 382 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 AGAP4Q96P64 663 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 DGAT2Q96PD7 388 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 SORT1Q99523 831 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 ALOXE3Q9BYJ1 711 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 MANSC1Q9H8J5 431 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 ADAP2Q9NPF8 381 aa16.63■□□□□ 0.25
CLN3-247ENST00000636351 OR10H2O60403 315 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 SERPINA7P05543 415 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 IL3P08700 152 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 COX7A2P14406 83 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 TNNI3P19429 210 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 SLC26A5P58743 744 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 TRA2BP62995 288 aaKnown RBP16.62■□□□□ 0.25
CLN3-247ENST00000636351 PLIN5Q00G26 463 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 Q0VFX4 171 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 UGT3A2Q3SY77 523 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 147.1 ms