RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 PPIL1Q9Y3C6 166 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 CNOT1A5YKK6 2376 aaKnown RBP13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 OR2A25A4D2G3 310 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 FAM227AF5H4B4 570 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 PSIP1O75475 530 aaKnown RBP13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 MPC1LP0DKB6 136 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 KDELR2P33947 212 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 ZMAT1Q5H9K5 638 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 PRAMEF13Q5VWM6 474 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 SLCO4C1Q6ZQN7 724 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 L3MBTL4Q8NA19 623 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 OR5H6Q8NGV6 325 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 PHOSPHO2Q8TCD6 241 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 SLC5A11Q8WWX8 675 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 DNASE1L2Q92874 299 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 ST6GAL2Q96JF0 529 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 C17orf62Q9BQA9 187 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 WDR26Q9H7D7 661 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 EQTNQ9NQ60 294 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 KRT84Q9NSB2 600 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 DCAF13Q9NV06 445 aaKnown RBP13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 KCNK5O95279 499 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 AK4P27144 223 aaPredicted RBP13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 PNLIPRP1P54315 467 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 VMACQ2NL98 169 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 ZNF750Q32MQ0 723 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 SYCE2Q6PIF2 218 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 RAB43Q86YS6 212 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 HIPK1Q86Z02 1210 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 AMER3Q8N944 861 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 TPSD1Q9BZJ3 242 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 PHPT1Q9NRX4 125 aaPredicted RBP13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 PLXNA4Q9HCM2 1894 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 WDFY4Q6ZS81 3184 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 A0A1W2PQU0 124 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 CTSEP14091 401 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 ACTR1BP42025 376 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 EPHA5P54756 1037 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 CDH12P55289 794 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 ACTR1AP61163 376 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 RAB30Q15771 203 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 C17orf64Q86WR6 236 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 ZNF761Q86XN6 746 aaPredicted RBP13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 UBQLNLQ8IYU4 475 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 CACTIN-AS1Q8N1I8 211 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 AADATQ8N5Z0 425 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 OTUB2Q96DC9 234 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 ARSGQ96EG1 525 aa13.78□□□□□ -0.2
SHROOM1-208ENST00000617339 SCO1O75880 301 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 SCELO95171 688 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 C9P02748 559 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 C1GALT1C1LP0DN25 315 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 MANFP55145 182 aaKnown RBP13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 CHRNEQ04844 493 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 MAD2L1BPQ15013 274 aaPredicted RBP13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 LIPJQ5W064 366 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 KLHL17Q6TDP4 642 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 MAP6Q96JE9 813 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 DPEP2Q9H4A9 486 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 FBXW2Q9UKT8 454 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 SATB2Q9UPW6 733 aa13.77□□□□□ -0.2
SHROOM1-208ENST00000617339 CACNB4O00305 520 aaPredicted RBP13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 PTPN5P54829 565 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 RAE1P78406 368 aaKnown RBP13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 UBE3AQ05086 875 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 C1orf61Q13536 156 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 IRF3Q14653 427 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 WDR20Q8TBZ3 569 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 HCAR2Q8TDS4 363 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 XAGE5Q8WWM1 108 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 SNX18Q96RF0 628 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 MYADMQ96S97 322 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 PIAS3Q9Y6X2 628 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 OR6C70A6NIJ9 312 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 M0R082 166 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 SLC16A6O15403 523 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 RRM2P31350 389 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 WNT3P56703 355 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 SLC5A12Q1EHB4 618 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 SPATS1Q496A3 300 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 SLX4IPQ5VYV7 408 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 PRSS48Q7RTY5 328 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 IQCF2Q8IXL9 164 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 RAD51AP1Q96B01 352 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 CXorf40BQ96DE9 158 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 ZDHHC5Q9C0B5 715 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 MAT2BQ9NZL9 334 aa13.77□□□□□ -0.21
SHROOM1-208ENST00000617339 FAM186AA6NE01 2351 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 LOC105371267A0A1B0GV96 52 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 NPC1O15118 1278 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 SUV39H1O43463 412 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 NARSO43776 548 aaKnown RBP13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 PCDHGA12O60330 932 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 SEMA3DO95025 777 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 FHP07954 510 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 OPRD1P41143 372 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 RPP38P78345 283 aaKnown RBP13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 ZNF45Q02386 682 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 ABHD18Q0P651 414 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 CST6Q15828 149 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms