RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 KANK2Q63ZY3 851 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 OR52E8Q6IFG1 317 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 FAM180BQ6P0A1 224 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 DGAT2L6Q6ZPD8 337 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 HPS6Q86YV9 775 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 CRLF3Q8IUI8 442 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 CATSPER1Q8NEC5 780 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 NFAM1Q8NET5 270 aaPredicted RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 B3GNT7Q8NFL0 401 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 OR4K14Q8NGD5 310 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 C16orf78Q8WTQ4 265 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 TWIST2Q8WVJ9 160 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 TLCD1Q96CP7 247 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 ZNF354BQ96LW1 612 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 LMF1Q96S06 567 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 TRIM4Q9C037 500 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 ILKAPQ9H0C8 392 aaPredicted RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.35□□□□□ -0.75
LIG1-211ENST00000596457 LIN28AQ9H9Z2 209 aaKnown RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 SLAMF7Q9NQ25 335 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 VTI1BQ9UEU0 232 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 TEKT2Q9UIF3 430 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 ZDHHC2Q9UIJ5 367 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 MCM8Q9UJA3 840 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 DLGAP4Q9Y2H0 992 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 CSAG2Q9Y5P2 127 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 CPAMD8Q8IZJ3 1885 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 DOPEY2Q9Y3R5 2298 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 A0A1W2PS29 197 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 C1orf226A1L170 272 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 DYTNA2CJ06 578 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 TTLL8A6PVC2 850 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 PIP5K1BO14986 540 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 DYRK3O43781 588 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 MAN1A2O60476 641 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 WDPCPO95876 746 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 SERPINE1P05121 402 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 IL3P08700 152 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 SOX11P35716 441 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 SERPINB5P36952 375 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 STT3AP46977 705 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 SLC1A6P48664 564 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 XKP51811 444 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 TRA2BP62995 288 aaKnown RBP10.34□□□□□ -0.75
LIG1-211ENST00000596457 PLIN5Q00G26 463 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 C2orf80Q0P641 193 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 ZNF267Q14586 743 aaPredicted RBP10.34□□□□□ -0.75
LIG1-211ENST00000596457 MEP1AQ16819 746 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 PLEKHN1Q494U1 663 aaPredicted RBP10.34□□□□□ -0.75
LIG1-211ENST00000596457 SLC6A19Q695T7 634 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 RPS19BP1Q86WX3 136 aaKnown RBP10.34□□□□□ -0.75
LIG1-211ENST00000596457 BEST3Q8N1M1 668 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 ZNF321PQ8N8H1 164 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 OR1N1Q8NGS0 311 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 OR14A16Q8NHC5 309 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 ELP5Q8TE02 316 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 PTPMT1Q8WUK0 201 aaPredicted RBP10.34□□□□□ -0.75
LIG1-211ENST00000596457 DAZLQ92904 295 aaKnown RBP10.34□□□□□ -0.75
LIG1-211ENST00000596457 VMP1Q96GC9 406 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 PPP1R36Q96LQ0 422 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 CNPPD1Q9BV87 410 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 FAIM2Q9BWQ8 316 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 TUBB1Q9H4B7 451 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 ANKRD10Q9NXR5 420 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 ABI3Q9P2A4 366 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 PCDHA9Q9Y5H5 950 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 DNAJC15Q9Y5T4 150 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 CROCCQ5TZA2 2017 aa10.34□□□□□ -0.75
LIG1-211ENST00000596457 TMEM114B3SHH9 223 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 RSL1D1O76021 490 aaKnown RBP10.33□□□□□ -0.76
LIG1-211ENST00000596457 FGF4P08620 206 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 DHRS4L1P0CG22 281 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 NT5EP21589 574 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 PTGER1P34995 402 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 FEN1P39748 380 aaKnown RBP10.33□□□□□ -0.76
LIG1-211ENST00000596457 MLLT10P55197 1068 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 WDR4P57081 412 aaKnown RBP10.33□□□□□ -0.76
LIG1-211ENST00000596457 ERVK-8P63133 956 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 RPL38P63173 70 aaKnown RBP10.33□□□□□ -0.76
LIG1-211ENST00000596457 OC90Q02509 493 aaPredicted RBP10.33□□□□□ -0.76
LIG1-211ENST00000596457 BIKQ13323 160 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 TTMPQ5BVD1 217 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 ACER2Q5QJU3 275 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 C6orf163Q5TEZ5 329 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 NOXRED1Q6NXP6 359 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 SLC48A1Q6P1K1 146 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 TRIM46Q7Z4K8 759 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 SLC5A8Q8N695 610 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 ZNF781Q8N8C0 355 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 MORN4Q8NDC4 146 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 OR2T11Q8NH01 316 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 SLC2A12Q8TD20 617 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 RIT1Q92963 219 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 EXOSC8Q96B26 276 aaKnown RBP10.33□□□□□ -0.76
LIG1-211ENST00000596457 KLHL29Q96CT2 875 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 ATP6V1G3Q96LB4 118 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 NPAS2Q99743 824 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 BRINP2Q9C0B6 783 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 C20orf27Q9GZN8 174 aa10.33□□□□□ -0.76
LIG1-211ENST00000596457 EPN3Q9H201 632 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms