RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 LAS2Q8IYD9 372 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 ZBED8Q8IZ13 594 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 TAGAPQ8N103 731 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 LRRC25Q8N386 305 aaPredicted RBP8.45□□□□□ -1.06
HDDC3-204ENST00000559834 PDPRQ8NCN5 879 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 PYROXD1Q8WU10 500 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 FAM222BQ8WU58 562 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 RGMAQ96B86 450 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 PPWD1Q96BP3 646 aaKnown RBP8.45□□□□□ -1.06
HDDC3-204ENST00000559834 FBXL20Q96IG2 436 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 JSRP1Q96MG2 331 aaPredicted RBP8.45□□□□□ -1.06
HDDC3-204ENST00000559834 CPNE1Q99829 537 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 GPATCH1Q9BRR8 931 aaKnown RBP8.45□□□□□ -1.06
HDDC3-204ENST00000559834 MCMBPQ9BTE3 642 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 TRIM31Q9BZY9 425 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 CLEC4MQ9H2X3 399 aaPredicted RBP8.45□□□□□ -1.06
HDDC3-204ENST00000559834 RPF2Q9H7B2 306 aaKnown RBP8.45□□□□□ -1.06
HDDC3-204ENST00000559834 CAB39LQ9H9S4 337 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 SH2D2AQ9NP31 389 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 MTRF1LQ9UGC7 380 aaKnown RBP8.45□□□□□ -1.06
HDDC3-204ENST00000559834 PHF11Q9UIL8 331 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 ST6GALNAC2Q9UJ37 374 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 ABCA4P78363 2273 aa8.45□□□□□ -1.06
HDDC3-204ENST00000559834 ANKRD33BA6NCL7 494 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 OR6C76A6NM76 312 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 CCDC188H7C350 402 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 TP53I11O14683 189 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 PHGDHO43175 533 aaKnown RBP8.44□□□□□ -1.06
HDDC3-204ENST00000559834 OR10H2O60403 315 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 SH3BGRLO75368 114 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 FAM155BO75949 473 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 SNX4O95219 450 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 WISP3O95389 354 aaPredicted RBP8.44□□□□□ -1.06
HDDC3-204ENST00000559834 GPR75O95800 540 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 EPPINO95925 133 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 IL2RAP01589 272 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 C1QAP02745 245 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 FBXO45P0C2W1 286 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 RFPL3SP0C7P2 107 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 EPB42P16452 691 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 TIMP3P35625 211 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 BUD31P41223 144 aaPredicted RBP8.44□□□□□ -1.06
HDDC3-204ENST00000559834 PIK3CBP42338 1070 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 PAFAH1B1P43034 410 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 PCDH1Q08174 1060 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 E2F2Q14209 437 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 ZNF267Q14586 743 aaPredicted RBP8.44□□□□□ -1.06
HDDC3-204ENST00000559834 OR4D1Q15615 310 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 CEBPEQ15744 281 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 PRAMEF20Q5VT98 475 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 FBXW10Q5XX13 1052 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 RNF111Q6ZNA4 994 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 KIF18BQ86Y91 864 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 C9orf40Q8IXQ3 194 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 PM20D2Q8IYS1 436 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 ULK2Q8IYT8 1036 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 ST13P4Q8IZP2 240 aaPredicted RBP8.44□□□□□ -1.06
HDDC3-204ENST00000559834 FAM13CQ8NE31 585 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 OR7G3Q8NG95 312 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 RIT1Q92963 219 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 RNASE6Q93091 150 aaKnown RBP8.44□□□□□ -1.06
HDDC3-204ENST00000559834 UBXN10Q96LJ8 280 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 DOHHQ9BU89 302 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 OR51B5Q9H339 312 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 ZNF703Q9H7S9 590 aaPredicted RBP8.44□□□□□ -1.06
HDDC3-204ENST00000559834 WDR41Q9HAD4 459 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 NMRAL1Q9HBL8 299 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 ZNF358Q9NW07 568 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 CRIM1Q9NZV1 1036 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 SPRR3Q9UBC9 169 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 OPTCQ9UBM4 332 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 ZNF629Q9UEG4 869 aaPredicted RBP8.44□□□□□ -1.06
HDDC3-204ENST00000559834 ANGPTL3Q9Y5C1 460 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 CHCHD2Q9Y6H1 151 aaPredicted RBP8.44□□□□□ -1.06
HDDC3-204ENST00000559834 ADGRG4Q8IZF6 3080 aa8.44□□□□□ -1.06
HDDC3-204ENST00000559834 SETD2Q9BYW2 2564 aaPredicted RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 C15orf38-AP3S2A0A0A6YYH1 394 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 TUBAL3A6NHL2 446 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 A6NNC1 897 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 K7EPI3 171 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 SAP18O00422 153 aaKnown RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 EIF3HO15372 352 aaKnown RBP eCLIP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 PROM1O43490 865 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 TRAPPC6AO75865 159 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 GSTA2P09210 222 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 EPORP19235 508 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 ENDOUP21128 410 aaKnown RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 BMP5P22003 454 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 PTX3P26022 381 aaPredicted RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 GDF1P27539 372 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 CEACAM8P31997 349 aaPredicted RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 GALNSP34059 522 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 SPRP35270 261 aaPredicted RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 GP5P40197 560 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 TRPC1P48995 793 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 ASCL1P50553 236 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 RAB10P61026 200 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 RPP38P78345 283 aaKnown RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 PHEXP78562 749 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 CALCOCO2Q13137 446 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms