RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 COMTD1Q86VU5 262 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 LACC1Q8IV20 430 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 CCDC103Q8IW40 242 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 ACOT4Q8N9L9 421 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 GPR32P1Q8NGA4 272 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 OR4D11Q8NGI4 311 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 OR2L8Q8NGY9 312 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 ZNF420Q8TAQ5 688 aaPredicted RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 PHF10Q8WUB8 498 aaKnown RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 FBLIM1Q8WUP2 373 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 MS4A6EQ96DS6 147 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 NEURL3Q96EH8 262 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 HSPBAP1Q96EW2 488 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 C16orf58Q96GQ5 468 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 COL21A1Q96P44 957 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 DOK1Q99704 481 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 TIMM29Q9BSF4 260 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 PRR14Q9BWN1 585 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 LMAN2LQ9H0V9 348 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 DDX31Q9H8H2 851 aaKnown RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 TIMMDC1Q9NPL8 285 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 ZCCHC3Q9NUD5 404 aaKnown RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 TSC22D4Q9Y3Q8 395 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 PIAS3Q9Y6X2 628 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 A0A0A6YYD5 115 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 TRBV4-1A0A0J9YWV2 114 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 H3BQ06 376 aaPredicted RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 NDUFS2O75306 463 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 BCAS1O75363 584 aaPredicted RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 LCKP06239 509 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 ACADMP11310 421 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 JUNBP17275 347 aaPredicted RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 TTKP33981 857 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 SH3BGRP55822 239 aaPredicted RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 HPCAP84074 193 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 IL18R1Q13478 541 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 LASP1Q14847 261 aaKnown RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 MICAQ29983 383 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 TOR1AIP1Q5JTV8 583 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 TMEM184AQ6ZMB5 413 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 AQP11Q8NBQ7 271 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 OR4C15Q8NGM1 316 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 OR10G6Q8NH81 332 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 RPLP0P6Q8NHW5 317 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 GEMIN6Q8WXD5 167 aaKnown RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 POP5Q969H6 163 aaKnown RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 FKBP10Q96AY3 582 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 ZBED6CLQ96FA7 236 aaPredicted RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 TUBA1CQ9BQE3 449 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 OR51I1Q9H343 314 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 SCN3BQ9NY72 215 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 ZNF624Q9P2J8 865 aaPredicted RBP10.06□□□□□ -0.8
CUX1-217ENST00000558836 ZNF232Q9UNY5 417 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 GMEB1Q9Y692 573 aa10.06□□□□□ -0.8
CUX1-217ENST00000558836 ZNF99A8MXY4 864 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 DNAJB6O75190 326 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 SOX14O95416 240 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 HOXB6P17509 224 aaKnown RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 XCR1P46094 333 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 EMP3P54852 163 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 GABARAPL2P60520 117 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 SLC9A5Q14940 896 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 TMEM107Q6UX40 140 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 SLC16A12Q6ZSM3 486 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 MEX3DQ86XN8 651 aaKnown RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 TMEFF1Q8IYR6 380 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 RORBQ92753 470 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 MUL1Q969V5 352 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 COL26A1Q96A83 441 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 CNRIP1Q96F85 164 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 BMFQ96LC9 184 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 AMDHD1Q96NU7 426 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ALPK1Q96QP1 1244 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 BBS4Q96RK4 519 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 PIP5K1AQ99755 562 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 GABRG3Q99928 467 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 TREX2Q9BQ50 279 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 C6orf106Q9H6K1 298 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 SLC35C2Q9NQQ7 365 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 PRDM7Q9NQW5 492 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 APOBEC3BQ9UH17 382 aaKnown RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 TPRKBQ9Y3C4 175 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 KCNE3Q9Y6H6 103 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 M0R3H8 397 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 CLEC3AO75596 197 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 IFNW1P05000 195 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ASGR2P07307 311 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ATXN8OSP0DMR3 200 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 NDUFV2P19404 249 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 HIST1H1TP22492 207 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 LTBRP36941 435 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 TOP3AQ13472 1001 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 PIN1Q13526 163 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 DCTN2Q13561 401 aaKnown RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 TJAP1Q5JTD0 557 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 CCDC80Q76M96 950 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 AMIGO1Q86WK6 493 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ZNF761Q86XN6 746 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 ARMC8Q8IUR7 673 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 P3H2Q8IVL5 708 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms