RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	DUS3L	Q96G46	650 aa	Known RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	LMLN	Q96KR4	655 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	C12orf66	Q96MD2	445 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	RBCK1	Q9BYM8	510 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	SUV39H2	Q9H5I1	410 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	PSORS1C1	Q9UIG5	152 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	EDAR	Q9UNE0	448 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	C5orf51	A6NDU8	294 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	TTC34	A8MYJ7	566 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF780A	O75290	641 aa	Predicted RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	POP4	O95707	220 aa	Known RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	GSR	P00390	522 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ACADM	P11310	421 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	TIA1	P31483	386 aa	Known RBP eCLIP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	PTGER1	P34995	402 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	SRP9	P49458	86 aa	Known RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	LRRC37A5P	Q49AS3	106 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZMAT1	Q5H9K5	638 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	HES5	Q5TA89	166 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	HAGHL	Q6PII5	290 aa	Predicted RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	AGTRAP	Q6RW13	159 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005		Q6ZVU0	165 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	KCTD9	Q7L273	389 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	SERPINA11	Q86U17	422 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF227	Q86WZ6	799 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF615	Q8N8J6	731 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	POMGNT2	Q8NAT1	580 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	CHST4	Q8NCG5	386 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR6K6	Q8NGW6	343 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR8K3	Q8NH51	312 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	WDR20	Q8TBZ3	569 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	KLK6	Q92876	244 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	RNF31	Q96EP0	1072 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZBED6CL	Q96FA7	236 aa	Predicted RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	C11orf84	Q9BUA3	381 aa	Predicted RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF350	Q9GZX5	532 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	MKRN2	Q9H000	416 aa	Known RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	SH3D21	A4FU49	640 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	GABRR3	A8MPY1	467 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	FAM155A	B1AL88	458 aa	Predicted RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005		M0R3H8	397 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	GTPBP1	O00178	669 aa	Known RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ARNTL	O00327	626 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	MRPS14	O60783	128 aa	Known RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	SCGB1D2	O95969	90 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	MMP2	P08253	660 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	GJA1	P17302	382 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	EIF2D	P41214	584 aa	Known RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	EMP3	P54852	163 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	LEXM	Q3ZCV2	418 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	EIPR1	Q53HC9	387 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	COX20	Q5RI15	118 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	GPRC6A	Q5T6X5	926 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	C1QTNF12	Q5T7M4	302 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	FAM46C	Q5VWP2	391 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	XAF1	Q6GPH4	301 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	LYPD4	Q6UWN0	246 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	LRRN1	Q6UXK5	716 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	DLEU7	Q6UYE1	221 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	RPTN	Q6XPR3	784 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	PAQR9	Q6ZVX9	377 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	DNAJC22	Q8N4W6	341 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	C3orf58	Q8NDZ4	430 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ASB12	Q8WXK4	309 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	RGMA	Q96B86	450 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	TIFA	Q96CG3	184 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZSWIM3	Q96MP5	696 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	NEURL2	Q9BR09	285 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	B3GNT4	Q9C0J1	378 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	COMMD4	Q9H0A8	199 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	CARS2	Q9HA77	564 aa	Known RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	GALNT9	Q9HCQ5	603 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	UPB1	Q9UBR1	384 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	SRRD	Q9UH36	339 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	NDOR1	Q9UHB4	597 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ERVW-1	Q9UQF0	538 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	DLGAP4	Q9Y2H0	992 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	YARS2	Q9Y2Z4	477 aa	Known RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR10H1	Q9Y4A9	318 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	LY75	O60449	1722 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	RGPD3	A6NKT7	1758 aa	Predicted RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	RGPD4	Q7Z3J3	1758 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	TEX13C	A0A0J9YWL9	993 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	MTMR11	A4FU01	709 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	NUPL2	O15504	423 aa	Known RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	TSPAN6	O43657	245 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	SSX4	O60224	188 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF821	O75541	412 aa	Predicted RBP	4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	CYP17A1	P05093	508 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	OSM	P13725	252 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	S100A10	P60903	97 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	RAB8A	P61006	207 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	TBPL1	P62380	186 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	KCNC3	Q14003	757 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	MEDAG	Q5VYS4	303 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	PLPP4	Q5VZY2	271 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC24A5	Q71RS6	500 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	PROKR2	Q8NFJ6	384 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR8D1	Q8WZ84	308 aa		4.76	□□□□□ -1.65
SYNE2-223	ENST00000557005	DNAJA3	Q96EY1	480 aa		4.76	□□□□□ -1.65

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