RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 RNF145Q96MT1 663 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 HBEGFQ99075 208 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 ZPBPQ9BS86 351 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 CCM2Q9BSQ5 444 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 THUMPD3Q9BV44 507 aaKnown RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 TWSG1Q9GZX9 223 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 OSGEPL1Q9H4B0 414 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 RMI1Q9H9A7 625 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 IFT80Q9P2H3 777 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 ATXN10Q9UBB4 475 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 DNAJB9Q9UBS3 223 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 OAZ3Q9UMX2 235 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 SAMD4AQ9UPU9 718 aaKnown RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 KCNK6Q9Y257 313 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 ORC6Q9Y5N6 252 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 CCDC88CQ9P219 2028 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 PCNX1Q96RV3 2341 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 CCDC160A6NGH7 325 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 TRIM64CA6NLI5 447 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 H0YIV9 168 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 CXCR6O00574 342 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 ZW10O43264 779 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 NOL3O60936 208 aaKnown RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 MTX2O75431 263 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 CREG1O75629 220 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 PGM3O95394 542 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 NCK1P16333 377 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 ZNF8P17098 575 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 SDC1P18827 310 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 CDH2P19022 906 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 GDF5P43026 501 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 DGKQP52824 942 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 RAD23AP54725 363 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 LAPTM5Q13571 262 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 SLC36A3Q495N2 470 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 ANXA8L1Q5VT79 327 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 TTC23Q5W5X9 447 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 DET1Q7L5Y6 550 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 SERPINA11Q86U17 422 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 ZDHHC13Q8IUH4 622 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 ZCCHC7Q8N3Z6 543 aaKnown RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 PHC3Q8NDX5 983 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 VPS37AQ8NEZ2 397 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 FIG4Q92562 907 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 GFM2Q969S9 779 aaKnown RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 AHCYL2Q96HN2 611 aaKnown RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 SH3GL3Q99963 347 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 RBM4BQ9BQ04 359 aaKnown RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 EFCAB11Q9BUY7 163 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 RBM4Q9BWF3 364 aaKnown RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 CHID1Q9BWS9 393 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 MFRPQ9BY79 579 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 ULBP3Q9BZM4 244 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 GRIP2Q9C0E4 1043 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 TRIM39Q9HCM9 518 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 DDX18Q9NVP1 670 aaKnown RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 USE1Q9NZ43 259 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 VAPAQ9P0L0 249 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 RPS6KA6Q9UK32 745 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 DYRK1BQ9Y463 629 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 PCYT1BQ9Y5K3 369 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-216ENST00000554975 KCNE2Q9Y6J6 123 aa10.55□□□□□ -0.72
SHMT2-216ENST00000554975 SLC5A10A0PJK1 596 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 PIPSLA2A3N6 862 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 ARHGEF33A8MVX0 844 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 RFXANKO14593 260 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 VEGFDO43915 354 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 RPN2P04844 631 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 TFAP2AP05549 437 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 THRBP10828 461 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 ATP6V1B1P15313 513 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 AMD1P17707 334 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 EPORP19235 508 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 CA5AP35218 305 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 FASLGP48023 281 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 ALDH3B2P48448 385 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 PGDP52209 483 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 ARSFP54793 590 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 RPS18P62269 152 aaKnown RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 IL18R1Q13478 541 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 DNASE1L3Q13609 305 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 E2F2Q14209 437 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 PCM1Q15154 2024 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 RBBP5Q15291 538 aaKnown RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 SGO1Q5FBB7 561 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 XKR6Q5GH73 641 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 CAPN13Q6MZZ7 669 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 JMJD6Q6NYC1 403 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 IYDQ6PHW0 289 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 WDR74Q6RFH5 385 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 AGTRAPQ6RW13 159 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 SUSD1Q6UWL2 747 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 C6orf15Q6UXA7 325 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-216ENST00000554975 UNC5DQ6UXZ4 953 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 MBOAT1Q6ZNC8 495 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 CAMKMTQ7Z624 323 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 SATL1Q86VE3 508 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 LRRTM4Q86VH4 590 aa10.54□□□□□ -0.72
SHMT2-216ENST00000554975 THOC6Q86W42 341 aaKnown RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms